bib copy number variations (2004)

Bibliography on copy number variations (2004)

front page
2008
2007
2006
2005
2004
2003
2002
2001
2000
90s
glossary
links
programs

Graham R Bignell, Jing Huang, Joel Greshock, Stephen Watt, Adam Butler, Sofie West, Mira Grigorova, Keith W Jones, Wen Wei, Michael R Stratton, P Andrew Futreal, Barbara Weber, Michael H Shapero, Richard Wooster (2004), "High-Resolution analysis of DNA copy number using oligonucleotide microarrays", Genome Research, 14:287-295.
[abstract]
B Carvalho, E Ouwerkerk, GA Meijer, B Ylstra (2004), "High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides", Journal of Clinical Pathology, 57:644-646.
Yeun-Jun Chung, Jos Jonkers, Hannah Kitson, Heike Fiegler, Sean Humphray, Carol Scott, Sarah Hunt, Yuejin Yu, Ichiko Nishijima, Arno Velds, Henne Holstege, Nigel Carter, Allan Bradley (2004), "A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization", Genome Research, 14:188-196.
[abstract]
RS Daruwala, A Rudra, H Ostrer, R Lucito, M Wigler, B Mishra (2004), "A versatile statistical analysis algorithm to detect genome copy number variation", Proceedings of the National Academy of Sciences, 101(46):16292-16297.
[abstract]
J Fridlyand, A Snijders, D Pinkel, DG Albertson, AN Jain (2004), "Application of hidden Markov models to the analysis of the array CGH data", Journal of Multvariate Analysis, 90:132-153.
Marine Guillaud-Bataille, Alexander Valent, Pascal Soularue, Christine Perot, Maria-del-Mar Inda, Aline Receveur, Sadek Smaïli, Hugues Roest Crollius, Jean Bénard, Alain Bernheim, Xavier Gidrol, Gisèle Danglot (2004), "Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH", Nucleic Acids Research, 32(13):e112.
[abstract]
J Huang, W Wei, J Zhang, G Liu, GR Bignell, MR Stratton, PA Futreal, R Wooster, KW Jones, MH Shapero (2004), "Whole genome DNA copy number changes identified by high density oligonucleotide arrays", Human Genomics, 1(4):287-299.
[PDF]
A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee (2004), "Detection of large-scale variation in the human genome", Nature Genetics, 36:949-951.
[abstract]
Adrian S Ishkanian, Chad A Malloff, Spencer K Watson, Ronald J deLeeuw, Bryan Chi, Bradley P Coe, Antoine Snijders, Donna G Albertson, Daniel Pinkel, Marco A Marra, Victor Ling, Calum MacAulay, Wan L Lam (2004), "A tiling resolution DNA microarray with complete coverage of the human genome", Nature Genetics, 36:299-303.
[abstract]
Kees Jong, Elena Marchiori, Gerrit Meijer, A v d Vaart, Bauke Ylstra (2004), "Breakpoint identification and smoothing of array comparative genomic hybridization data", Bioinformatics, 20(18):3636-3637.
[abstract]
Jiangzhen Li, Tao Jiang, Jian-Hua Mao, Allan Balmain, Leif Peterson, Charles Harris, Pulivarthi H Rao, Paul Havlak, Richard Gibbs, Wei-Wen Cai (2004), "Genomic segmental polymorphisms in inbred mouse strains", Nature Genetics, 36:952-954.
[abstract]
Ming Lin, Lee-Jen Wei, William R. Sellers, Marshall Lieberfarb, Wing Hung Wong, Cheng Li (2004), "dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data", Bioinformatics, 20:1233-1240.
[PDF]
AB Olshen, ES Venkatraman, R Lucito, M Wigler (2004), "Circular binary segmentation for the analysis of array-based DNA copy number data", Biostatistics, 5:557-572.
[abstract]
J Sebat, B Lakshmi, J Troge, J Alexander, J Young, P Lundin, S Månér, H Massa, M Walker, M Chi, N Navin, R Lucito, J Healy, J Hicks, K Ye, A Reiner, TC Gilliam, B Trask, N Patterson, A Zetterberg, M Wigler (2004), "Large-scale copy number polymorphism in the human genome", Science, 305(5683):525-528.
[abstract]
Maija Wolf, Spyro Mousses, Sampsa Hautaniemi, Ritva Karhu, Pia Huusko, Minna Allinen, Abdel Elkahloun, Outi Monni, Yidong Chen, Anne Kallioniemi, Olli-P Kallioniemi (2004), "High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on DNA microarrays: impact of copy number on gene expression", Neoplasia, 6(3): 240-247.
[html]
Xiaojun Zhao, Cheng Li, J Guillermo Paez, Koei Chin, Pasi A Jänne, Tzu-Hsiu Chen, Luc Girard, John Minna, David Christiani, Chris Leo, Joe W Gray, William R Sellers, Matthew Meyerson (2004), "An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays", Cancer Research, 64:3060-3071.
[abstract]

		Bibliography on copy number variations (2004)
	front page 2008 2007 2006 2005 2004 2003 2002 2001 2000 90s glossary links programs	Graham R Bignell, Jing Huang, Joel Greshock, Stephen Watt, Adam Butler, Sofie West, Mira Grigorova, Keith W Jones, Wen Wei, Michael R Stratton, P Andrew Futreal, Barbara Weber, Michael H Shapero, Richard Wooster (2004), "High-Resolution analysis of DNA copy number using oligonucleotide microarrays", Genome Research, 14:287-295. [abstract] B Carvalho, E Ouwerkerk, GA Meijer, B Ylstra (2004), "High resolution microarray comparative genomic hybridisation analysis using spotted oligonucleotides", Journal of Clinical Pathology, 57:644-646. Yeun-Jun Chung, Jos Jonkers, Hannah Kitson, Heike Fiegler, Sean Humphray, Carol Scott, Sarah Hunt, Yuejin Yu, Ichiko Nishijima, Arno Velds, Henne Holstege, Nigel Carter, Allan Bradley (2004), "A whole-genome mouse BAC microarray with 1-Mb resolution for analysis of DNA copy number changes by array comparative genomic hybridization", Genome Research, 14:188-196. [abstract] RS Daruwala, A Rudra, H Ostrer, R Lucito, M Wigler, B Mishra (2004), "A versatile statistical analysis algorithm to detect genome copy number variation", Proceedings of the National Academy of Sciences, 101(46):16292-16297. [abstract] J Fridlyand, A Snijders, D Pinkel, DG Albertson, AN Jain (2004), "Application of hidden Markov models to the analysis of the array CGH data", Journal of Multvariate Analysis, 90:132-153. Marine Guillaud-Bataille, Alexander Valent, Pascal Soularue, Christine Perot, Maria-del-Mar Inda, Aline Receveur, Sadek Smaïli, Hugues Roest Crollius, Jean Bénard, Alain Bernheim, Xavier Gidrol, Gisèle Danglot (2004), "Detecting single DNA copy number variations in complex genomes using one nanogram of starting DNA and BAC-array CGH", Nucleic Acids Research, 32(13):e112. [abstract] J Huang, W Wei, J Zhang, G Liu, GR Bignell, MR Stratton, PA Futreal, R Wooster, KW Jones, MH Shapero (2004), "Whole genome DNA copy number changes identified by high density oligonucleotide arrays", Human Genomics, 1(4):287-299. [PDF] A John Iafrate, Lars Feuk, Miguel N Rivera, Marc L Listewnik, Patricia K Donahoe, Ying Qi, Stephen W Scherer, Charles Lee (2004), "Detection of large-scale variation in the human genome", Nature Genetics, 36:949-951. [abstract] Adrian S Ishkanian, Chad A Malloff, Spencer K Watson, Ronald J deLeeuw, Bryan Chi, Bradley P Coe, Antoine Snijders, Donna G Albertson, Daniel Pinkel, Marco A Marra, Victor Ling, Calum MacAulay, Wan L Lam (2004), "A tiling resolution DNA microarray with complete coverage of the human genome", Nature Genetics, 36:299-303. [abstract] Kees Jong, Elena Marchiori, Gerrit Meijer, A v d Vaart, Bauke Ylstra (2004), "Breakpoint identification and smoothing of array comparative genomic hybridization data", Bioinformatics, 20(18):3636-3637. [abstract] Jiangzhen Li, Tao Jiang, Jian-Hua Mao, Allan Balmain, Leif Peterson, Charles Harris, Pulivarthi H Rao, Paul Havlak, Richard Gibbs, Wei-Wen Cai (2004), "Genomic segmental polymorphisms in inbred mouse strains", Nature Genetics, 36:952-954. [abstract] Ming Lin, Lee-Jen Wei, William R. Sellers, Marshall Lieberfarb, Wing Hung Wong, Cheng Li (2004), "dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data", Bioinformatics, 20:1233-1240. [PDF] AB Olshen, ES Venkatraman, R Lucito, M Wigler (2004), "Circular binary segmentation for the analysis of array-based DNA copy number data", Biostatistics, 5:557-572. [abstract] J Sebat, B Lakshmi, J Troge, J Alexander, J Young, P Lundin, S Månér, H Massa, M Walker, M Chi, N Navin, R Lucito, J Healy, J Hicks, K Ye, A Reiner, TC Gilliam, B Trask, N Patterson, A Zetterberg, M Wigler (2004), "Large-scale copy number polymorphism in the human genome", Science, 305(5683):525-528. [abstract] Maija Wolf, Spyro Mousses, Sampsa Hautaniemi, Ritva Karhu, Pia Huusko, Minna Allinen, Abdel Elkahloun, Outi Monni, Yidong Chen, Anne Kallioniemi, Olli-P Kallioniemi (2004), "High-resolution analysis of gene copy number alterations in human prostate cancer using CGH on DNA microarrays: impact of copy number on gene expression", Neoplasia, 6(3): 240-247. [html] Xiaojun Zhao, Cheng Li, J Guillermo Paez, Koei Chin, Pasi A Jänne, Tzu-Hsiu Chen, Luc Girard, John Minna, David Christiani, Chris Leo, Joe W Gray, William R Sellers, Matthew Meyerson (2004), "An integrated view of copy number and allelic alterations in the cancer genome using single nucleotide polymorphism arrays", Cancer Research, 64:3060-3071. [abstract]