corr in DNA (1994)

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1994

Cheryl Berthelsen, James A Glazier, Sridhar Raghavachari (1994), "Effective multifractal spectrum of a random walk", Physical Review E, 49(3):1860-1864.
M Borodovsky, A Peresetsky (1994), "Deriving non-homogeneous DNA Markov chain models by cluster analysis algorithm minimizing multiple alignment entropy", Computers & Chemistry, 18(3):259-268.
B Borstnik (1994), "The character of the correlations in DNA sequences", International Journal of Quantum Chemistry, 52(2):457-463.
B Borstnik, D Pumpernik, D Lukman, D Ugarkovic, M Plohl (1994), "Tandemly repeated pentanucleotides in DNA sequences of eukaryotes", Nucleic Acids Research, 22 (16):3412-3417.
repeats

B Charlesworth, P Sniegowski, W Stephan (1994), "The evolutionary dynamics of repetitive DNA in eukaryotes", Nature, 371:215-220.
CA Chatzidimitriou-Dreismann, RMF Streffer, D Larhammar (1994), "Are there any fractals in DNA of living organisms", Berichte der Bunsen Gesellschaft fur Physikalisch Chemie - an International Journal of Physical Chemistry, 98(9):1141.
CA Chatzidimitriou-Dreismann, RMF Streffer, D Larhammar (1994), "Variations in base-pair composition and associated long-range correlations in DNA sequence - computer simulation results", Biochimica et Biophysica Acta - Gene Structure and Expression, 1217(2):181-187.
[ abstract] [abstract]
CA Chatzidimitriou-Dreismann, RMF Streffer, D Larhammar (1994), "A quantitative test of long-range correlations and compositional fluctuations in DNA sequences", European Journal of Biochemistry, 224(2):365-371. [abstract]
VR Chechetkin, LA Knizhnikova, AY Turygin (1994), "Three-quasi-periodicity, mutual correlations, ordering and long-range modulations in genomic nucleotide-sequences for viruses," Journal of Biomolecular Structure and Dynamics, 12(2):271-299. [abstract]
VR Chechetkin, AY Turygin (1994), "On the spectral criteria of disorder in nonperiodic sequences - application to inflation models, symbolic dynamics and DNA sequences", Journal of Physics A, 27(14):4875-4898.
[abstract]
protein

I Cosic (1994), "Macromolecular boiactivityL is it resonant interaction between macromolecules? - theory and applications", IEEE Transactions on Biomedical Engineer, 41(12):1101-1114.
G Gutierrez, JL Oliver, A Marin (1994), "On the origin of the periodicity of three in protein coding DNA sequences", Journal of Theoretical Biology, 167(4):413-414.
protein

J Heringa (1994) "The evolution and recognition of protein sequence repeats", Computers & Chemistry, 18(3):233-243.
H Herzel, W Ebeling, AO Schmitt (1994), "Entropies of biosequences - the role of repeats", Physical Review E, 50(6):5061-5071.
[ abstract] [ PDF ]
H Herzel, A Schmitt, W Ebeling (1994), "Finite sample effects in sequence analysis", Chaos, Solitons & Fractals, 4:97-113.
VV Kapitonov, II Titov (1994), "Introns order and long-range correlations in nucleotide-sequences"[in Russian], Doklady Akademii Nauk, 337(6):810-812.
S Karlin (1994), "Statistical studies of biomolecular sequences: score-based methods", Philosophical Transactions of the Royal Society: B. Biological Sciences, 344(1310):391-402.
[ Medline entry ]
S Karlin, I Ladunga (1994), "Comparisons of eukaryotic genomic sequences", Proceedings of the National Academy of Sciences, 91(26):12832-12836. [ Medline entry]
S Karlin, I Ladunga, BE Blaisdell (1994) "Heterogeneity of genomes: measures and values", Proceedings of the National Academy of Sciences, 91(26):12837-12841. [ Medline entry ]
MY Leung, G Schachtel, HS Yu (1994), "Scan statistics and DNA sequence analysis: the search for an origin of replication in a virus", Nolnear World, 1:445-471.
W Li, TG Marr, K Kaneko (1994), "Understanding long-range correlations in DNA sequences", Physica D, 75(1-3):392-416; erratum: 82, 217 (1995).
[ abstract ] [abstract]
P Lió, S Ruffo, M Buiatti (1994), "Third codon G + C periodicity as a possible signal for an "internal" selective constraint", Journal of Theoretical Biology, 171(2):215-223 (Nov 21).
[ abstract]
a/symmetry

Jan Mrazek, Jaroslav Kypr (1994), "Biased distribution of Adenine and Thymine in gene nucleotide sequences", Journal of Molecular Evolution, 39:439-447.
A Nandy (1994), "A new graphical representation and analysis of DNA sequence structure: I. methodology and application to globin genes", Current Science, 66(4):309-314.
A Nandy (1994), "Graphical representation of long DNA sequences", Current Science, 66(11):821-?.
SM Ossadnik, SV Buldyrev, AL Goldberger, S Havlin, RN Mantegna, CK Peng, M Simon, HE Stanley (1994), "Correlation approach to identify coding regions in DNA sequences", Biophysical Journal, 67(1):64-70.
[ abstract]
protein

VS Pande, AY Grosberg, T Tanaka (1994), "Nonrandomness in protein sequences - evidence for a physically driven stage of evolution", Proceedings of the National Academy of Sciences, 91(26):12972-12975. [ abstract]
CK Peng, SV Buldyrev, S Havlin, M Simon, HE Stanley, AL Goldberger (1994), "Mosaic organization of DNA nucleotides", Physical Review E, 49(2):1685-1689.
[ abstract]
Adrian Raftery, Simon Tavare (1994), "Estimation and modelling repeated patterns in high order Markov chains with the mixture transition distribution model", Applied Statistics, 43:179-199.
S Scherer, MS McPeek, TP Speed (1994), "Atypical regions in large genomic DNA sequences", Proceedings of the National Academy of Sciences, 91:7134-7138.
M Schoniger, A von Haeseler (1994), "A stochastic model for the evolution of autocorrelated DNA sequences", Molecular Phylogenetics and Evolution, 3(3):240-247.
[ abstract] [abstract]
N Shnerb, E Eisenberg (1994), "Analyzing long-range correlations in finite sequences", Physical Review E, 49(2):R1005-R1008.
[ abstract]
HE Stanley, SV Buldyrev, AL Goldberger, ZD Goldberger, S Havlin, RN Mantegna, SM Ossadnik, CK Peng, M Simon (1994), "Statistical mechanics in biology - how ubiquitous are long-range correlations", Physica A, 205(1-3):214-253.
a/symmetry

M Tanaka, O Takayuki (1994), "Strand asymmetry in human mitochondrial DNA mutations", Genomics, 22:327-335.
AY Turygin, VR Chechetkin (1994), "Criteria of disorder in aperiodic sequences" [in Russian], Zhurnal Eksperimentalnoi I Teoreticheskoi Fiziki, 106(1):335-354.
RF Voss (1994), "Long-range fractal correlations in DNA introns and exons", Fractals, 2(1):1-6.
[ abstract]
protein

SH White (1994), "Global statistics of protein sequences: implications for the origin, evolution, and prediction of structure", Annual Review of Biophysics and Biomolecular Structure, 23:407-439.