corr in DNA (1995)

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1995

A Arneodo, E Bacry, PV Graves, JF Muzy (1995), "Characterizing long-range correlations in DNA sequences from wavelet analysis", Physical Review Letters, 74(16):3293-3296.
[abstract] [ PDF ]
N Avril, P Deschavanne, M Bellis, J Filipski (1995), "Loop-size spacings between CGCG clusters in long segments of human DNA", Biochemical and Biophysical Research Communications, 213(1):147-153.
Mark Ya Azbel (1995), "Universality in a DNA statistical structure ", Physical Review Letters, 75(1):168-171.
[abstract] [ PDF ]
isochore

G Bernardi (1995), "The human genome: organization and evolutionary history", Annual Review of Genetics, 23:637-661.
Anatoly S. Borovik, Alexander Yu. Grosberg, Maxim D Frank-Kamenetskii (1995), "Fractality of DNA texts", Journal of Biomolecular Structure and Dynamics, 12(3), 655-669.
[abstract]
SV Buldyrev, AL Goldberger, S Havlin, RN Mantegna, ME Masta, CK Peng, M Simmons, HE Stanley (1995), "Long-range correlation properties of coding and non-coding DNA sequences - GenBank analysis", Physical Review E, 51(5):5084-5091.
[ PDF]
N Carels, A Barakat, G Bernardi (1995), "The gene distribution of the maize genome", Proceedings of the National Academy of Sciences, 92(24):11057-11060.
VR Chechetkin, AY Turygin (1995), "Size-dependence of 3-periodicity and long-range correlations in DNA sequences", Physics Letters A, 199(1-2):75-80.
[abstract] [abstract]
VR Chechetkin, AY Turygin (1995), "Search of hidden periodicities in DNA sequences", Journal of Theoretical Biology, 175:477-494.
[abstract]
AMC de Souza, C Anteneodo (1995), "A model for nucleotide sequences", Biophysical Journal, 69, 1708-1711 (November)
P Deschavanne, J Filipski (1995), "Correlation of GC content with replication timing and repair mechanisms in weakly expressed E.coli genes", Nucleic Acids Research, 23(8):1350-1353.
T Gregory Dowey (1995), "Sequence generating function and the multifractal formalism: applications to biopolymers", Fractals, 3(1):7-22.
isochore

L Duret, D Mouchiroud, M Gouy (1995), "Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores", Journal of Molecular Evolution, 40:308-317.
Werner Ebeling, Alexander Neiman, Thorsten Pvschel (1995), "Dynamic entropies, long-range correlations and fluctuations in complex linear structures", in Coherent Approach to Fluctuations (Proc. Hayashibara Forum 95) , ed. M. Suzuki (World Scientific). [abstract] [ PDF ]
Martin Farach, Michiel Noordewier, Serap Savari, Larry Shepp, Abraham Wyner, Jacob Ziv (1995), "On the entropy of DNA: algorithms and measurements based on memory and rapid convergence", Proceedings of the sixth annual ACM-SIAM symposium on Discrete algorithms, pp.48-57.
isochore

T Fukagawa, K Sugaya, K Matsumoto, K Okumura, A Ando, H Inoko, T Ikemura (1995), ``A boundary of long-range G+C% mosaic domains in the human MHC locus: pseudoautosomal boundary-like sequence exists near the boundary", Genomics, 25(1):184-191.
sequence

RD Fleischmann, MD Adams, O White, RA Clayton, EF Kirkness, AR Kerlavage, CJ Bult, JF Tomb, BA Dougherty, JM Merrick, K McKenney, G Sutton, W FitzHugh, C Fields, JD Gocayne, J Scott, R Shirley, LI Liu, A Glodek, JM Kelley, JF Weidman, CA Phillips, T Spriggs, E Hedblom, MD Cotton, TR Utterback, MC Hanna, DT Nguyen, DM Saudek, RC Brandon, LD Fine, JL Fritchman, JL Fuhrmann, NSM Geoghagen, CL Gnehm, LA McDonald, KV Small, CM Fraser, HQ Smith, JC Venter (1995), "Whole-genome random sequencing and assembly of Haemophilus influenzae Rd.", Science, 269:496-512.
a/symmetry

DR Forsdyke (1995) "Relative roles of primary sequence and (G + C)% in determining the hierarchy of frequencies of complementary trinucleotide pairs in DNAs of different species", Journal of Molecular Evolution, 41(5):573-581.
[ Medline entry ]
sequence

CM Fraser, JD Gocayne, O White, MD Adams, RA Clayton, RD Fleischmann, CJ Bult, AR Kerlavage, G Sutton, JM Kelley, JL Fritchman, JF Weidman, KV Small, M Sandusky, J Fuhrmann, D Nguyen, TR Utterback, DM Saudek, CA Phillips, JM Merrick, JF Tomb, BA Dougherty, KF Bott, PC Hu, TS Lucier, SN Peterson, HO Smith, CA Hutchison, III, JC Venter (1995), "The minimal gene complement of Mycoplasma genitalium", Science, 270:397-403.
MS Gelfand (1995) "FANS-REF: a bibliography on statistics and functional analysis of nucleotide sequences", Computer Applications in Biosciences, 11(5):541.
S Hannenhalli, P Pevzner (1995), "Transforming men into mice (polynomial algorithm for genomic distance problems)", Proceedings of IEEE Symposium of the Foundations of Computer Science, pp.581-592.
Hanspeter Herzel, Ivo Große (1995), "Measuring correlations in symbolic sequences", Physica A, 216:518-542.
[ abstract]
H Herzel, W Ebeling, AO Schmitt, MA Jimenez-Montano (1995), "Entropies and lexicographic analysis of biosequences ", in From Simplicity to Complexity in Chemistry and Beyond , eds. A. Muller, A. Dress, F. Vogtle (Vierweg-Verlag, Braunschweig)
[abstract]
repeats

J Jurka, C Pethiyagoda (1995), "Simple repetitive DNA sequences from primates: compilation and analysis", Journal of Molecular Evolution, 40(2):120-126.
protein

S Karlin (1995), "Statistical significance of sequence patterns in proteins", Current Opinion in Structural Biology, 5(3):360-371. [ Medline entry]
S Karlin, C Burge (1995), "Dinucleotide relative abundance extremes: a genomic signature", Trends in Genetics, 11(7):283-290. [ Medline entry ]
GI Kutuzova, RI Polozov (1995), "An algorithm for searching for specific segments in the primary structure of DNA" (in Russian), Biofizika, 40(1):198-199.
a/symmetry

JR Lobry (1995), "Properties of a general model of DNA evolution under no-strand-bias conditions", Journal of Molecular Evolution, 40:326-330.
[ abstract] [ Medline entry ]
VJ Makeev, VG Tumanyan, NG Esipova (1995), "The third nucleotide of the Gly coding triplet remembers the periodicity of the collagen chain", FEBS Letters, 366(1):33-36.
Ricardo Mansilla, Rosendo Mateo-Reig (1995), "On the mathematical modeling of intronic sectors of the DNA molecule", International Journal of Bifurcation and Chaos, 5(4):1235-1241.
Jan Mrazek and Jaroslav Kypr (1995), "Middle-range clustering of nucleotides in genomes ", Computer Applications in Biosciences, 11(2):195-199.
[abstract]
H Musto, H Rodriguez-Maseda, G Bernardi (1995), "Compositional properties of nuclear genes from Plasmodium falciparum.", Gene, 152(1):127-132.
A Nandy, P Nandy (1995), "Graphical analysis of DNA sequence structure: II. relative abundances of nucleotides in DNAs, gene evolution and duplication", Current Science, 68(1):75-85.
TG Popova, MG Sadovskii (1995), "Redundancy of eukaryotic DNA decreases after excision of introns," Molecular Biology, 29(3):281-285; translated from Molecular Biology (Molekulyarnaya Biologiya), 29(3):500-506.
[abstract]
repeats

AF Smit, G Toth, AD Riggs, J Jurka (1995), "Ancestral, mammalian-wide subfamilies of LINE-1 repetitive sequences", Journal of Molecular Biology, 246(3):401-417.
[abstract]
a/symmetry

N Sueoka (1995), "Intrastrand parity rules of DNA base composition and usage biases of synonymous codons", Journal of Molecular Evolution, 40:318-325.