corr in DNA (2008)

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2008

Mark Bauer, Sheldon M Schuster, Khalid Sayood (2008), "The average mutual information profile as a genomic signature", BMC Bioinformatics, 9:48.
[abstract]
Christoph Bock, Thomas Lengauer (2008) "Computational epigenetics", Bioinformatics, 24(1):1-10.
[abstract]
isochore

M Costantini, G Bernardi (2008), "Correlations between coding and contiguous non-coding sequences in isochore families from vertebrate genomes", Gene, 410(2):241-248.
a/symmetry

KJ Evans (2008), "Genomic DNA from animals shows contrasting strand bias in large and small subsequences", BMC Genomics, 9(1):43.
sequence

Simon J Foote, Janine T Bossé, Anne B Bouevitch, Paul R Langford, N Martin Young, and John HE Nash (2008), "The complete genome sequence of Actinobacillus pleuropneumoniae L20 (serotype 5b)", Journal of Bacteriology, to appear.
Simon Gog, Martin Bader, and Enno Ohlebusch (2008), "GENESIS: genome evolution scenarios", Bioinformatics, 24(5):711-712.
[abstract]
Iva Hrabcova, Jaroslav Kypr (2008), "The longest (A+T) and (G+C) blocks in the human and other genomes", Journal of Biomolecular Structure and Dynamics, 25(4):337-346.
[abstract]
JE Karro, M Peifer, RC Hardison, M Kollmann, HH von Grünberg (2008), "Exponential decay of GC content detected by strand-symmetric substitution rates influences the evolution of isochore structure", Molecular Biology and Evolution, 25(2):362-374.
repeats

YD Kelkar, S Tyekucheva, F Chiaromonte, KD Makova (2008), "The genome-wide determinants of human and chimpanzee microsatellite evolution", Genome Research, 18(1):30-38.
isochore

MK Li, L Gu, SS Chen, JQ Dai, SH Tao (2008), "Evolution of the isochore structure in the scale of chromosome: insight from the mutation bias and fixation bias", Journal of Evolutionary Biology, 21(1):173-182.
repeats

Xuehui Li, Tamer Kahveci, A Mark Settles (2008), "A novel genome-scale repeat finder geared towards transposons", Bioinformatics, 24(4):468-476.
[abstract]
sequence

Eric Lyons, Michael Freeling (2008), "How to usefully compare homologous plant genes and chromosomes as DNA sequences", The Plant Journal, 53(4):661-673.
[ abstract]
sequence

SA Rensing, D Lang, A Zimmer, A Terry, A Salamov, H Shapiro, T Nishiyama, F P-Perroud, E Lindquist, Y Kamisugi, T Tanahashi, K Sakakibara, T Fujita, K Oishi, T Shin-I, Y Kuroki, A Toyoda, Y Suzuki, I S-Hashimoto, K Yamaguchi, S Sugano, Y Kohara, A Fujiyama, N Ashton, A Anterola, S Aoki, WB Barbazuk, E Barker, J Bennetzen, R Blankenship, SH Cho, S Dutcher, M Estelle, J Fawcett, H Gundlach, K Hanada, A Heyl, KA Hicks, J Hughes, M Lohr, K Mayer, A Melkozernov, T Murata, DR Nelson, B Pils, M Prigge, B Reiss, T Renner, S Rombauts, P Rushton, A Sanderfoot, G Schween, H S-Shiu, K Stueber, FL Theodoulou, H Tu, Y Van de Peer, PJ Verrier, E Waters, A Wood, G Yang, D Cove, AC Cuming, M Hasebe, S Lucas, BD Mishler, R Reski, I Grigoriev, RS Quatrano, JL Boore (2008), "The genome of the moss Physcomitrella patens reveals evolutionary insights into the conquest of land by plants", Science, 319:64-69.
Dustin E Schones, Keji Zhao (2008), "Genome-wide approaches to studying chromatin modifications", Nature Reviews Genetics, 9:179-191.
[abstract]
sequence

Stefan M. Sievert, Kathleen M. Scott, Martin G. Klotz, Patrick S. G. Chain, Loren J. Hauser, James Hemp, Michael Hügler, Miriam Land, Alla Lapidus, Frank W. Larimer, Susan Lucas, Stephanie A. Malfatti, Folker Meyer, Ian T. Paulsen, Qinghu Ren, Jörg Simon, and the USF Genomics Class (2008), "The genome of the epsilonproteobacterial chemolithoautotroph Sulfurimonas denitrificans", Applied and Environmental Microbiology, to appear.
GS Vernikos, J Parkhill (2008), "Resolving the structural features of genomic islands: A machine learning approach", Genome Research, to appear.
Wen-Xin Zheng, Chun-Ting Zhang (2007), "Biological implications of isochore boundaries in the human genome", Journal of Biomolecular Structure and Dynamics, 25(4):327-336.
[abstract]