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+ 2009

  1. AJ Arvey, RK Azad, A Raval, JG Lawrence (2009), "Detection of genomic islands via segmental genome heterogeneity", Nucleic Acids Research, to appear.

  2. B Audit, L Zaghloul, C Vaillant, G Chevereau, Y d'Aubenton-Carafa, C Thermes, A Arneodo (2009), "Open chromatin encoded in DNA sequence is the signature of 'master' replication origins in human cells", Nucleic Acids Research, 37(18):6064-6075.

  3. sequence
    T Baba, Kuwahara-Arai K, Uchiyama I, Takeuchi F, Ito T, Hiramatsu K (2009), "Complete genome sequence of Macrococcus caseolyticus strain JSCS5402, reflecting the ancestral genome of the human-pathogenic staphylococci", Journal of Bacteriology, 191(4):1180-1190.

  4. sequence
    David A Baltrus, Manuel R Amieva, Antonello Covacci, Todd M Lowe, D Scott Merrell, Karen M Ottemann, Markus Stein, Nina R Salama, Karen Guillemin (2009), "The complete genome sequence of Helicobacter pylori Strain G27", Journal of Bacteriology, 191(1):447-448.
    [ abstract]

  5. sequence
    PA Beare, Unsworth N, Andoh M, Voth DE, Omsland A, Gilk SD, Williams KP, Sobral BW, Kupko JJ 3rd, Porcella SF, Samuel JE, Heinzen RA (2009), "Comparative genomics reveal extensive transposon-mediated genomic plasticity and diversity among potential effector proteins within the genus Coxiella", Infection and Immunity, 77(2):642-656.

  6. sequence
    MI Bellgard, Wanchanthuek P, La T, Ryan K, Moolhuijzen P, Albertyn Z, Shaban B, Motro Y, Dunn DS, Schibeci D, Hunter A, Barrero R, Phillips ND, Hampson DJ (2009), "Genome sequence of the pathogenic intestinal spirochete brachyspira hyodysenteriae reveals adaptations to its lifestyle in the porcine large intestine", PLoS ONE, 4(3):e4641.

  7. sequence
    Bovine Genome Sequencing and Analysis Consortium, Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, Adelson DL, Eichler EE, Elnitski L, Guigó R, Hamernik DL, Kappes SM, Lewin HA, Lynn DJ, Nicholas FW, Reymond A, Rijnkels M, Skow LC, Zdobnov EM, Schook L, Womack J, Alioto T, Antonarakis SE, Astashyn A, Chapple CE, Chen HC, Chrast J, Câmara F, Ermolaeva O, Henrichsen CN, Hlavina W, Kapustin Y, Kiryutin B, Kitts P, Kokocinski F, Landrum M, Maglott D, Pruitt K, Sapojnikov V, Searle SM, Solovyev V, Souvorov A, Ucla C, Wyss C, Anzola JM, Gerlach D, Elhaik E, Graur D, Reese JT, Edgar RC, McEwan JC, Payne GM, Raison JM, Junier T, Kriventseva EV, Eyras E, Plass M, Donthu R, Larkin DM, Reecy J, Yang MQ, Chen L, Cheng Z, Chitko-McKown CG, Liu GE, Matukumalli LK, Song J, Zhu B, Bradley DG, Brinkman FS, Lau LP, Whiteside MD, Walker A, Wheeler TT, Casey T, German JB, Lemay DG, Maqbool NJ, Molenaar AJ, Seo S, Stothard P, Baldwin CL, Baxter R, Brinkmeyer-Langford CL, Brown WC, Childers CP, Connelley T, Ellis SA, Fritz K, Glass EJ, Herzig CT, Iivanainen A, Lahmers KK, Bennett AK, Dickens CM, Gilbert JG, Hagen DE, Salih H, Aerts J, Caetano AR, Dalrymple B, Garcia JF, Gill CA, Hiendleder SG, Memili E, Spurlock D, Williams JL, Alexander L, Brownstein MJ, Guan L, Holt RA, Jones SJ, Marra MA, Moore R, Moore SS, Roberts A, Taniguchi M, Waterman RC, Chacko J, Chandrabose MM, Cree A, Dao MD, Dinh HH, Gabisi RA, Hines S, Hume J, Jhangiani SN, Joshi V, Kovar CL, Lewis LR, Liu YS, Lopez J, Morgan MB, Nguyen NB, Okwuonu GO, Ruiz SJ, Santibanez J, Wright RA, Buhay C, Ding Y, Dugan-Rocha S, Herdandez J, Holder M, Sabo A, Egan A, Goodell J, Wilczek-Boney K, Fowler GR, Hitchens ME, Lozado RJ, Moen C, Steffen D, Warren JT, Zhang J, Chiu R, Schein JE, Durbin KJ, Havlak P, Jiang H, Liu Y, Qin X, Ren Y, Shen Y, Song H, Bell SN, Davis C, Johnson AJ, Lee S, Nazareth LV, Patel BM, Pu LL, Vattathil S, Williams RL Jr, Curry S, Hamilton C, Sodergren E, Wheeler DA, Barris W, Bennett GL, Eggen A, Green RD, Harhay GP, Hobbs M, Jann O, Keele JW, Kent MP, Lien S, McKay SD, McWilliam S, Ratnakumar A, Schnabel RD, Smith T, Snelling WM, Sonstegard TS, Stone RT, Sugimoto Y, Takasuga A, Taylor JF, Van Tassell CP, Macneil MD, Abatepaulo AR, Abbey CA, Ahola V, Almeida IG, Amadio AF, Anatriello E, Bahadue SM, Biase FH, Boldt CR, Carroll JA, Carvalho WA, Cervelatti EP, Chacko E, Chapin JE, Cheng Y, Choi J, Colley AJ, de Campos TA, De Donato M, Santos IK, de Oliveira CJ, Deobald H, Devinoy E, Donohue KE, Dovc P, Eberlein A, Fitzsimmons CJ, Franzin AM, Garcia GR, Genini S, Gladney CJ, Grant JR, Greaser ML, Green JA, Hadsell DL, Hakimov HA, Halgren R, Harrow JL, Hart EA, Hastings N, Hernandez M, Hu ZL, Ingham A, Iso-Touru T, Jamis C, Jensen K, Kapetis D, Kerr T, Khalil SS, Khatib H, Kolbehdari D, Kumar CG, Kumar D, Leach R, Lee JC, Li C, Logan KM, Malinverni R, Marques E, Martin WF, Martins NF, Maruyama SR, Mazza R, McLean KL, Medrano JF, Moreno BT, Moré DD, Muntean CT, Nandakumar HP, Nogueira MF, Olsaker I, Pant SD, Panzitta F, Pastor RC, Poli MA, Poslusny N, Rachagani S, Ranganathan S, Razpet A, Riggs PK, Rincon G, Rodriguez-Osorio N, Rodriguez-Zas SL, Romero NE, Rosenwald A, Sando L, Schmutz SM, Shen L, Sherman L, Southey BR, Lutzow YS, Sweedler JV, Tammen I, Telugu BP, Urbanski JM, Utsunomiya YT, Verschoor CP, Waardenberg AJ, Wang Z, Ward R, Weikard R, Welsh TH Jr, White SN, Wilming LG, Wunderlich KR, Yang J, Zhao FQ. (2009), "The genome sequence of taurine cattle: a window to ruminant biology and evolution" Science, 324(5926):522-528.

  8. G Bucciarelli, M Di Filippo, D Costagliola, F Alvarez-Valin, G Bernardi, G Bernardi (2009), "Environmental genomics: a tale of two fishes", Molecular Biology and Evolution, 26(6):1235-1243.

  9. R Cammarano, M Costantini, G Bernardi (2009), "The isochore patterns of invertebrate genomes", BMC Genomics, 10:538.

  10. sequence
    BJ Campbell, Smith JL, Hanson TE, Klotz MG, Stein LY, Lee CK, Wu D, Robinson JM, Khouri HM, Eisen JA, Cary SC (2009), "Adaptations to submarine hydrothermal environments exemplified by the genome of Nautilia profundicola", PLoS Genetics, 5(2):e1000362.

  11. P Carpena, P Bernaola-Galván, M Hackenberg, AV Coronado, JL Oliver (2009), "Level statistics of words: finding keywords in literary texts and symbolic sequences", Physical Review E, 79(3):035102.

  12. protein
    Matteo Comin, Concettina Guerra, Frank Dellaert (2009), "Binding balls: fast detection of binding sites using a property of spherical Fourier transform", Journal of Computational Biology, 16(11):1577-1591.
    [ abstract]

  13. Maria Costantini, Giorgio Bernardi (2009), "Mapping insertions, deletions and SNPs on Venter's chromosomes", PLoS ONE, 4(6):e5972.

  14. Maria Costantini, Rosalia Cammarano, Giorgio Bernardi (2009), "The evolution of isochore patterns in vertebrate genomes", BMC Genomics, 10:146.
    [ abstract]

  15. Richard Cordaux, Mark A. Batzer (2009), "The impact of retrotransposons on human genome evolution", Nature Reviews Genetics, 10:691-703.
    [ abstract]

  16. sequence
    NJ Croucher, Walker D, Romero P, Lennard N, Paterson GK, Bason NC, Mitchell AM, Quail MA, Andrew PW, Parkhill J, Bentley SD, Mitchell TJ (2009), "Role of conjugative elements in the evolution of the multidrug-resistant pandemic clone Streptococcus pneumoniaeSpain23F ST81", Journal of Bacteriology, 191(5):1480-1490.

  17. sequence
    MJ Dark, Herndon DR, Kappmeyer LS, Gonzales MP, Nordeen E, Palmer GH, Knowles DP Jr, Brayton KA (2009), "Conservation in the face of diversity: multistrain analysis of an intracellular bacterium", BMC Genomics, 10:16.

  18. L Duret, N Galtier (2009), "Biased gene conversion and the evolution of mammalian genomic landscapes", , 10:285-311.

  19. E Elhaik, G Landan, D Graur (2009), "Can GC content at third-codon positions be used as a proxy for isochore composition?", Molecular Biology and Evolution, 26(8):1829-1833.

  20. Andrés Esteban-Marcos, Aaron E Darling, Mark A Ragan (2009), "Seevolution: visualizing chromosome evolution", Bioinformatics, 25(7):960-961.
    [abstract]

  21. isochore
    P Fearnhead, D Vasileiou (2009), "Bayesian Analysis of isochores", Journal of American Statistical Association, 104(485):132-141.
    [ abstract]

  22. Jan Freudenberg, Mingyi Wang, Yaning Yang, Wentian Li (2009), "Partial correlation analysis indicates causal relationships between GC-content, exon density and recombination rate variation in the human genome", BMC Bioinformatics, 10(suppl 1):S66.
    [abstract]

  23. Maik Friedel, Swetlana Nikolajewa, Jürgen Sühnel, and Thomas Wilhelm (2009), "DiProGB: the dinucleotide properties genome browser", Bioinformatics, 25(19): 2603-2604
    [abstract]

  24. isochore
    Nicolas Galtier, Laurent Duret, Sylvain Glémin, Vincent Ranwez (2009), "GC-biased gene conversion promotes the fixation of deleterious amino acid changes in primates", Trends in Genetics, 25(1):1-5.
    [abstract]

  25. R Giancarlo, D Scaturro, F Utro (2009), "Textual data compression in computational biology: a synopsis", Bioinformatics, 25(13):1575-1586.
    [abstract]

  26. AM Guo, SJ Xiong (2009), "Violation of the single-parameter scaling hypothesis in human chromosome 22 with charge transfer models", Physical Review E, 79(4):041924.

  27. sequence
    MT Holden, Seth-Smith HM, Crossman LC, Sebaihia M, Bentley SD, Cerdeńo-Tárraga AM, Thomson NR, Bason N, Quail MA, Sharp S, Cherevach I, Churcher C, Goodhead I, Hauser H, Holroyd N, Mungall K, Scott P, Walker D, White B, Rose H, Iversen P, Mil-Homens D, Rocha EP, Fialho AM, Baldwin A, Dowson C, Barrell BG, Govan JR, Vandamme P, Hart CA, Mahenthiralingam E, Parkhill J (2009), "The genome of Burkholderia cenocepacia J2315, an epidemic pathogen of cystic fibrosis patients", Journal of Bacteriology, 191(1):261-277.

  28. B Hutter, M Paulsen, V Helms (2009), "Identifying CpG islands by different computational techniques", OMICS, 13(2):153-164.

  29. sequence
    A Iguchi, Thomson NR, Ogura Y, Saunders D, Ooka T, Henderson IR, Harris D, Asadulghani M, Kurokawa K, Dean P, Kenny B, Quail MA, Thurston S, Dougan G, Hayashi T, Parkhill J, Frankel G (2009), "Complete genome sequence and comparative genome analysis of enteropathogenic Escherichia coli O127:H6 strain E2348/69", Journal of Bacteriology, 191(1):347-354.

  30. ZB Jiang, HJ Yang, JB Wang (2009), "Complexities of human promoter sequences", Physica A, 388(7):1299-1302.

  31. Ashwin Kelkar, Vivek Thakur, Ramakrishna Ramaswamy, Deepti Deobagkar (2009), "Characterisation of inactivation domains and evolutionary strata in human X chromosome through Markov segmentation", PLoS ONE, 4(11):e7885.
    [ abstract]

  32. Jongkwang Kim, Sowun Kim, Kunsang Lee, Younghun Kwon (2009), "Entropy analysis in yeast DNA", Chaos, Solitons & Fractals, 39(4):1565-1571
    [ abstract] Alert This article is not included in your organization's subscription. However, you may be able to access this article under your organization's agreement with Elsevier.

  33. sequence
    Jihyun F Kim, Haeyoung Jeong, Dong Su Yu, Sang-Haeng Choi, Cheol-Goo Hur, Myeong-Soo Park, Sung Ho Yoon, Dae-Won Kim, Geun Eog Ji, Hong-Seog Park, Tae Kwang Oh (2009), "Genome sequence of the probiotic bacterium Bifidobacterium animalis subsp. lactis AD011", Journal of Bacteriology, 191(2):678-679.
    [ abstract]

  34. Yuseob Kim and Thomas Wiehe (2009), "Simulation of DNA sequence evolution under models of recent directional selection", Briefings in Bioinformatics, 10(1):84-96.
    [abstract]

  35. TA Knoch, M Goker, R Lohner R, et al. (2009), "Fine-structured multi-scaling long-range correlations in completely sequenced genomes-features, origin, and classification", European Biophysics Journal with Biophysics Letters, 38(6):757-779.

  36. SG Kong, WL Fan, HD Chen, et al. (2009), "Quantitative measure of randomness and order for complete genomes", Physical Review E, 79(6):061911.

  37. C Lemaitre, L Zaghloul, MF Sagot, C Gautier, A Arneodo, E Tannier, B Audit (2009), "Analysis of fine-scale mammalian evolutionary breakpoints provides new insight into their relation to genome organisation", BMC Genomics, 10:335.

  38. sequence
    Si-Kyu Lim, Sang Jun Kim, Sun Ho Cha, You-Kwan Oh, Hae-Jin Rhee, Mi-Sun Kim, Jeong K Lee (2009), "Complete genome sequence of Rhodobacter sphaeroides KD131", Journal of Bacteriology, 191(3):1118-1119.
    [ abstract]

  39. repeats
    GE Liu, Alkan C, Jiang L, Zhao S, Eichler EE (2009), "Comparative analysis of Alu repeats in primate genomes", Genome Research, 19(5):876-885.

  40. sequence
    WQ Liu, Feng Y, Wang Y, Zou QH, Chen F, Guo JT, Peng YH, Jin Y, Li YG, Hu SN, Johnston RN, Liu GR, Liu SL (2009), "Salmonella paratyphi C: genetic divergence from Salmonella choleraesuis and pathogenic convergence with Salmonella typhi", PLoS ONE, 4(2):e4510.

  41. JV Lorenzo-Ginori, A Rodriguez-Fuentes, RG Abalo, RS Rodríguez (2009), "Digital signal processing in the analysis of genomic sequences", Current Bioinformatics, 4(1):28-40.
    [ abstract]

  42. sequence
    D Martinez, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D (2009), "Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion", Proceedings of National Academy of Sciences, 106(6):1954-1959.

  43. Israel M Martinez-Perez, Karl-Heinz Zimmermann, Zoya Ignatova (2009), "An autonomous DNA model for finite state automata", International Journal of Bioinformatics Research and Applications, 5(1):81-96.
    [ abstract]

  44. Michael W McCoy, Andrew P Allen, James F Gillooly (2009), "The random nature of genome architecture: predicting open reading frame distributions", PLoS ONE, 4(7):e6456.
    [ abstract]

  45. P Milani, G Chevereau, C Vaillant, B Audit, Z Haftek-Terreau, M Marilley, P Bouvet, F Argoul, A Arneodo (2009), "Nucleosome positioning by genomic excluding-energy barriers", Proceedings of National Academy of Sciences, 106(52):22257-22262.

  46. Eduardo Moltó, Almudena Fernández and Lluís Montoliu (2009), "Boundaries in vertebrate genomes: different solutions to adequately insulate gene expression domains", Briefings in Functional Genomics and Proteomics, 8(4):283-296.
    [abstract]

  47. sequence
    CL Nesbř, Bapteste E, Curtis B, Dahle H, Lopez P, Macleod D, Dlutek M, Bowman S, Zhaxybayeva O, Birkeland NK, Doolittle WF (2009), "The genome of Thermosipho africanus TCF52B: lateral genetic connections to the Firmicutes and Archaea", Journal of Bacteriology, 191(6):1974-1978.

  48. sequence
    Hyun-Myung Oh, Stephen J Giovannoni, Steve Ferriera, Justin Johnson, Jang-Cheon Cho (2009), "Complete genome sequence of Erythrobacter litoralis HTCC2594", Journal of Bacteriology, 191(7):2419-2420.
    [ abstract]

  49. sequence
    Andrew H Paterson, John E Bowers, Rémy Bruggmann, Inna Dubchak, Jane Grimwood, Heidrun Gundlach, Georg Haberer, Uffe Hellsten, Therese Mitros, Alexander Poliakov, Jeremy Schmutz, Manuel Spannagl, Haibao Tang, Xiyin Wang, Thomas Wicker, Arvind K Bharti, Jarrod Chapman, F Alex Feltus, Udo Gowik, Igor V Grigoriev, Eric Lyons, Christopher A Maher, Mihaela Martis, Apurva Narechania, Robert P Otillar, Bryan W Penning, Asaf A Salamov, Yu Wang, Lifang Zhang, Nicholas C Carpita, Michael Freeling, Alan R Gingle, C Thomas Hash, Beat Keller, Patricia Klein, Stephen Kresovich, Maureen C McCann, Ray Ming, Daniel G Peterson, Mehboob-ur-Rahman, Doreen Ware, Peter Westhoff, Klaus F X Mayer, Joachim Messing, Daniel S Rokhsar (2009), "The Sorghum bicolor genome and the diversification of grasses", Nature, 457:551-556.
    [ abstract]

  50. GM Pavlovi'-Lazeti', NS Mitic', MV Beljanski (2009), "n-Gram characterization of genomic islands in bacterial genomes", Computer Methods and Programs in Biomedicine, 93(3):241-256

  51. protein
    E Pirogova, M Akay, I Cosic (2009), "Investigating the interaction between oncogene and tumor suppressor protein", IEEE Transactions on Information Technology in Biomedicine, 13(1):10-15.
    [ abstract]

  52. Paz Polak, Peter F Arndt (2009), "Long-range bidirectional strand asymmetries originate at CpG islands in the human genome", Genome Biology and Evolution, 1:189-197.
    [ abstract]

  53. Petre G Pop (2009), "Spectral representations of alpha satellite DNA", WSEAS Transactions on Information Science and Applications, 6(5):819-828.

  54. Astero Provata, Panayotis Katsaloulis, Theoharis Theoharis (2009), "Long range clustering of oligonucleotides containing the CG signal", Journal of Theoretical Biology, to appear.
    [abstract]

  55. sequence
    Jacques Ravel, Lingxia Jiang, Scott T Stanley, Mark R Wilson, R Scott Decker, Timothy D Read, Patricia Worsham, Paul S Keim, Steven L Salzberg, Claire M Fraser-Liggett, David A Rasko (2009), "The complete genome sequence of Bacillus anthracis Ames 'Ancestor' ", Journal of Bacteriology, 191(1):445-446.
    [ abstract]

  56. sequence
    NV Ravin NV, Mardanov AV, Beletsky AV, Kublanov IV, Kolganova TV, Lebedinsky AV, Chernyh NA, Bonch-Osmolovskaya EA, Skryabin KG (2009), "Complete genome sequence of the anaerobic, protein-degrading hyperthermophilic crenarchaeon Desulfurococcus kamchatkensis", Journal of Bacteriology, 191(7):2371-2379.

  57. G Reinert, D Chew, F Sun, MS Waterman (2009), "Alignment-free sequence comparison (I): statistics and power", Journal of Computational Biology, 16(12):1615-1634.
    [ abstract]

  58. sequence
    Anna-Louise Reysenbach, N Hamamura, M Podar, E Griffiths, S Ferreira, R Hochstein, J Heidelberg, J Johnson, D Mead, A Pohorille, M Sarmiento, K Schweighofer, R Seshadri, M A Voytek (2009), "Complete and draft genome sequences of six members of the Aquificales", Journal of Bacteriology, 191(6):1992-1993.
    [ abstract]

  59. sequence
    R Rosenstein, Nerz C, Biswas L, Resch A, Raddatz G, Schuster SC, Götz F (2009), "Genome analysis of the meat starter culture bacterium Staphylococcus carnosus TM300", Applied and Environmental Microbiology, 75(3):811-822.

  60. V Sabbia, H Romero, H Musto, H Naya (2009), "Composition profile of the human genome at the chromosome level", Journal of Biomolecular Structure and Dynamics, 27(3):361-370.

  61. Steven L Salzberg, Daniela Puiu, Daniel D Sommer, Vish Nene, Norman H Lee (2009), "Genome sequence of the Wolbachia endosymbiont of Culex quinquefasciatus JHB", Journal of Bacteriology, 191(5):1725.
    [ abstract]

  62. M Seki, Honda I, Fujita I, Yano I, Yamamoto S, Koyama A (2009), "Whole genome sequence analysis of Mycobacterium bovis bacillus Calmette-Guérin (BCG) Tokyo 172: A comparative study of BCG vaccine substrains", Vaccine, 27(11):1710-1716.

  63. D Sellis, Y Almirantis (2009), "Power-laws in the genomic distribution of coding segments in several organisms: an evolutionary trace of segmental duplications, possible paleopolyploidy and gene loss", Gene, 447(1):18-28.

  64. sequence
    AW Strittmatter, Liesegang H, Rabus R, Decker I, Amann J, Andres S, Henne A, Fricke WF, Martinez-Arias R, Bartels D, Goesmann A, Krause L, Pühler A, Klenk HP, Richter M, Schüler M, Glöckner FO, Meyerdierks A, Gottschalk G, Amann R (2009), "Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide", Environmental Microbiology, to appear.

  65. YG Strukov, AS Belmont (2009), "Mitotic chromosome structure: reproducibility of folding and symmetry between sister chromatids", Biophysical Journal, 96(4):1617-1628.

  66. N Usotskaya, B Ryabko (2009), "Application of information-theoretic tests for the analysis of DNA sequences based on Markov chain models", Computational Statistics & Data Analysis, 53(5):1861-1872.

  67. sequence
    NL Ward, Challacombe JF, Janssen PH, Henrissat B, Coutinho PM, Wu M, Xie G, Haft DH, Sait M, Badger J, Barabote RD, Bradley B, Brettin TS, Brinkac LM, Bruce D, Creasy T, Daugherty SC, Davidsen TM, Deboy RT, Detter JC, Dodson RJ, Durkin AS, Ganapathy A, Gwinn-Giglio M, Han CS, Khouri H, Kiss H, Kothari SP, Madupu R, Nelson K, Nelson WC, Paulsen I, Penn K, Ren Q, Rosovitz MJ, Selengut JD, Shrivastava S, Sullivan SA, Tapia R, Thompson LS, Watkins KL, Yang Q, Yu C, Zafar N, Zhou L, Kuske CR (2009), "Three genomes from the phylum Acidobacteria provide insight into their lifestyles in soils", Applied and Environmental Microbiology, to appear.

  68. sequence
    PN Ward, Holden MT, Leigh JA, Lennard N, Bignell A, Barron A, Clark L, Quail MA, Woodward J, Barrell BG, Egan SA, Field TR, Maskell D, Kehoe M, Dowson CG, Chanter N, Whatmore AM, Bentley SD, Parkhill J (2009), "Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis", BMC Genomics, 10:54.

  69. Y Watanabe, T Abe, T Ikemura, M Maekawa (2009), "Relationships between replication timing and GC content of cancer-related genes on human chromosomes 11q and 21q", Gene, 433(1-2):26-31.

  70. sequence
    C Winstanley, Langille MG, Fothergill JL, Kukavica-Ibrulj I, Paradis-Bleau C, Sanschagrin F, Thomson NR, Winsor GL, Quail MA, Lennard N, Bignell A, Clarke L, Seeger K, Saunders D, Harris D, Parkhill J, Hancock RE, Brinkman FS, Levesque RC (2009), "Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa", Genome Research, 19(1):12-23.

  71. sequence
    PC Woo, Lau SK, Tse H, Teng JL, Curreem SO, Tsang AK, Fan RY, Wong GK, Huang Y, Loman NJ, Snyder LA, Cai JJ, Huang JD, Mak W, Pallen MJ, Lok S, Yuen KY (2009), (2009), "The complete genome and proteome of Laribacter hongkongensis reveal potential mechanisms for adaptations to different temperatures and habitats", PLoS Genetics, 5(3):e1000416.

  72. sequence
    D Wu, Raymond J, Wu M, Chatterji S, Ren Q, Graham JE, Bryant DA, Robb F, Colman A, Tallon LJ, Badger JH, Madupu R, Ward NL, Eisen JA (2009), "Complete genome sequence of the aerobic CO-oxidizing thermophile Thermomicrobium roseum", PLoS ONE, 4(1):e4207.

  73. sequence
    Zhaohui Xiong, Yan Jiang, Danhua Qi, Huaibao Lu, Fan Yang, Jian Yang, Lihong Chen, Lilian Sun, Xingye Xu, Ying Xue, Yafang Zhu, Qi Jin (2009), "Complete genome sequence of the extremophilic Bacillus cereus strain Q1 with industrial applications", Journal of Bacteriology, 191(3):1120-1121.
    [ abstract]

  74. Byung-Jun Yoon (2009), "Hidden Markov models and their applications in biological sequence analysis", Current Genomics, to appear.

  75. sequence
    Min Yue, Fan Yang, Jian Yang, Weicheng Bei, Xuwang Cai, Lihong Chen, Jie Dong, Rui Zhou, Meilin Jin, Qi Jin, Huanchun Chen (2009), "Complete genome sequence of Haemophilus parasuis SH0165", Journal of Bacteriology, 191(4):1359-1360.
    [ abstract]

  76. Y Zhang (2009), "Relations between Shannon entropy and genome order index in segmenting DNA sequences", Physical Review E, 79(4):041918.
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[about] [links] [complete genomes] [gene duplication] [dna/protein music] [gene recognition] [mirror]