1989

• isochore

  Giorgio Bernardi (1989), "The icochore organization of the human genome", Annual Review of Genetics, 23:637-661.

• GA Churchill (1989), "Stochastic models for heterogeneous DNA sequences", Bulletin of Mathematical Biology, 51(1):79-94.
  [ abstract]

• RN Curnow, TBL Kirkwood (1989), "Statistical analysis of deoxyribonucleic acid sequence data - a review", Journal of Royal Statistical Society, Series A (Statistics in Soceity), 152:199-220.
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• repeats

  J Jurka (1989), "Subfamily structure and evolution of the human L1 family of repetitive sequences", Journal of Molecular Evolution, 29(6):496-503.

• isochore

  G Matassi, LM Montero, J Salinas, G Bernardi (1989), "The isochore organization and the compositional distribution of homologous coding sequences in the nuclear genome of plants", Nucleic Acids Research, 17(13):5273-5290.

• R Nussinov (1989), "The ordering of the nucleotides in DNA: computational problems in molecular biology", Comput Biol Med., 19(4):269-281.

• R Nussinov, A Sarai, GW Smythers, RL Jernigan (1989), "Sequence context of oligomer tracts in eukaryotic DNA: biological and conformational implications", Journal of Biomolecular Structure and Dynamics, 6(3):543-562.

• R Nussinov, A Sarai, GW Smythers, RL Jernigan (1989), "Distinct patterns in homooligomer tract sequence context in prokaryotic and eukaryotic DNA", Biochim Biophys Acta., 1008(3):329-338.

• dna-music

  S Ohno (1989), "Modern coding sequences are in the periodic-to-chaotic transition", Hamatol Bluttransfus, 32:512-519. [ abstract]

• S Tavare, BW Giddings (1989), "Some statistical aspects of the primary structure of nucleotide sequences", in Mathematical Methods for DNA Sequences , ed. MS Waterman (CRC Press).

• BS Weir (1989), "Mathematical analysis of DNA sequences", Genome, 31(2):1093-1094.

• repeats

  E Zuckerkandl, G Latter, J Jurka (1989), "Maintenance of function without selection: Alu sequences as 'cheap genes'", Journal of Molecular Evolution, 29(6):504-512.

1988

• isochore

  Bernardi G, Mouchiroud D, Gautier C, Bernardi G (1988), "Compositional patterns in vertebrate genomes: conservation and change in evolution", Journal of Molecular Evolution, 28(1-2):7-18.

• H Herzel (1988), "Complexity of symbol sequences", Sys. Anal. Mod. Sim. 5:435-444.

• isochore

  T Ikemura, S Aota (1988), "Global variation in G+C content along vertebrate genome DNA: possible correlation with chromosome band structure", Journal of Molecular Biology, 203(1):1-13.

• repeats

  J Jurka, T Smith (1988), "A fundamental division in the Alu family of repeated sequences", Proceedings of National Academy of Sciences, 85(13):4775-4778.

• LF Luo, L Tsai, YM Zhou (1988), "Informational parameters of nucleic acid and molecular evolution", Journal of Theoretical Biology, 130(3):351-361.

• D Mouchiroud, C Gautier, G Bernardi (1988), "The compositional distribution of coding sequences and DNA molecules in humans and murids", Journal of Molecular Evolution, 27(4):311-320.

• S Ohno (1988), "Codon preference is but an illusion created by the construction principle of coding sequences", Proceedings of the National Academy of Sciences, 85:4378-4382.

• S Ohno (1988), "On periodicities governing the construction of genes and proteins", Animal Genetics, 19(4):305-316.

• isochore

  J Salinas, G Matassi, LM Montero, G Bernardi (1988), "Compositional compartmentalization and compositional patterns in the nuclear genomes of plants", Nucleic Acids Research, 16(10):4269-4285.

• isochore

  Noboru Sueoka (1988), "Directional mutation pressure and neutral molecular evolution", Proceedings of the National Academy of Sciences, 85:2653-2657.

• BS Weir (1988), "Statistical analysis of DNA sequences", Journal of National Cancer Institute, 80(6):395-406.

1987

• M Bulmer (1987), "A statistical analysis of nucleotide sequences of introns and exons in human genes", Molecular Biology and Evolution, 4:395-405.

• Walter B Goad (1987), "Sequence analysis: contributions by Ulam to molecular genetics", Los Alamos Science, 15:288-291.
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• (a)symmetry

  Jaroslav Kypr, Jan Mrazek (1987), "Occurrence of nucleotide triplets in genes and secondary structure of the coded proteins", International Journal of Biol. Macromol. 9:49-53.

• isochore

  D Mouchiroud, G Fichant, G Bernardi (1987), "Compositional compartmentalization and gene composition in the genome of vertebrates", Journal of Molecular Evolution, 26(3):198-204.

• A Muto, S Osawa (1987), "The guanine and cytosine content of genomic DNA and bacterial evolution", Proceedings of the National Academy of Sciences, 84:166-169.
  [PDF]

• dna-music

  S Ohno (1987), "Repetition as the essence of life on this earth: music and genes", Hamatol Bluttransfus, 31:511-518. [abstract]

• T Ohta (1987), "A model of evolution for accumulating genetic information", Journal of Theoretical Biology, 124:199-211.

• T Ohta (1987), "Simulating evolution by gene duplication", Genetics, 115:207-213.

• a/symmetry

  CI Wu, N Maeda (1987), "Inequality in mutation rates of the two strands of DNA", Nature, 327:169-170.

1986

• S Aota, T Ikemura (1986), "Diversity in G+C content at the third position of codons in vertebrate genes and its cause", Nucleic Acids Research, 14:6345-6355.

• isochore

  G Bernardi, G Bernardi (1986), "Compositional constraints and genome evolution", Journal of Molecular Evolution, 24(1-2):1-11.

• binding-energy

  KJ Breslauer, R Frank, H Blocker, LA Marky (1986), "Predicting DNA duplex stability from the base sequence", Proceedings of the National Academy of Sciences, 83(11):3746-3750.

• M de Zamaroczy , G Bernardi (1986), "The GC clusters of the mitochondrial genome of yeast and their evolutionary origin", Gene, 41(1):1-22.

• dna-music

  S Ohno, M. Ohno, "The all persuasive principle of repititious recurrences governs not only coding sequence construction but also human endeavour in musical composition", Immunogenetics, 24, 71-78 (1986). [abstract]

• J Salinas, M Zerial, J Filipski, G Bernardi (1986), "Gene distribution and nucleotide sequence organization in the mouse genome", European Journal of Biochemistry, 160(3):469-478.

• BD Silverman, R Linsker (1986), "A measure of DNA periodicity", Journal of Theoretical Biology, 118:295-300.

• binding

  A Wada, A Suyama (1986), "Local stability of DNA and RNA secondary structure and its relation to biological functions", Progress in Biophysics and Molecular Biology, 47:113-157.

• M Zerial, J Salinas, J Filipski, G Bernardi (1986), "Gene distribution and nucleotide sequence organization in the human genome", European Journal of Biochemistry, 160(3):479-485.

1985

• G Bernardi, G Bernardi (1985), "Codon usage and genome composition", Journal of Molecular Evolution, 22(4):363-365.

• isochore

  G Bernardi, B Olofsson, J Filipski, M Zerial, J Salinas, G Cuny, M Meunier-Rotival, F Rodier (1985), "The mosaic genome of warm-blooded vertebrates", Science, 228(4702):953-958.

• M de Zamaroczy, G Bernardi (1985), "Sequence organization of the mitochondrial genome of yeast - a review", Gene, 37(1-3):1-17.

• J Jurka, MA Savageau (1985), "Gene density over the chromosome of Escherichia coli: frequency distribution, spatial clustering, and symmetry", Journal of Bacteriology, 163(2):806-811.

• A Wada, A Suyama (1985), "Third letters in codons counterbanace the (G+C) content of their first and second letters", FEBS Letters, 188:291-294.

• bending

  VB Zhurkin (1985), "Sequence-dependent bending of DNA and phasing of nucleosomes", Journal of Biomolecular Structure & Dynamics, 2(4):785-804.

1984

• MJ Bibb, PR Findlay, MW Johnson (1984), "The relationship between base composition and codon usage in bacterial genes and its use for the simple and reliable identification of protein-coding sequences", Gene, 30(1-3):157-166.

• Christian Burks, Doyne Farmer (1984), "Towards modeling DNA sequences as automata", Physica D, 10:157-167.

• dna-music

  K Hayashi, N Munakata (1984), "Basically musical", Nature, 310:96.

• repeats

  L Sun, K E Paulson, C W Schmid, L Kadyk, and L Leinwand (1984), "Non-Alu family interspersed repeats in human DNA and their transcriptional activity", Nucleic Acids Research, 12(6):2669-2690.

• A Wada, A Suyama (1984), "Stability distribution in the phage lambda-DNA double helix: a correlation between physical and genetic structure", Journal of Biomolecular Structure & Dynamics, 2(3):573-591.

1983

• isochore

  B Olofsson, G Bernardi (1983), "Organization of nucleotide sequences in the chicken genome", European Journal of Biochemistry, 130(2):241-245.

• JC Shepherd (1983), "From primeval message to present-day gene", Cold Spring Harbor Symposium in Quantitative Biology, 47(Part 2):1099-1108.

• repeats

  P Soriano, M Meunier-Rotival, G Bernardi (1983), "The distribution of interspersed repeats is nonuniform and conserved in the mouse and human genomes", Proceedings of the National Academy of Sciences, 80(7):1816-1820.

• binding-energy

  A Suyama, A Wada (1983), "Correlation between thermal stability maps and genetic maps of double-stranded DNAs", Journal of Theoretical Biology, 105(1):133-145.

• bending

  VB Zhurkin (1983), "Specific alignment of nucleosomes on DNA correlates with periodic distribution of purine-pyrimidine and pyrimidine-purine dimers", FEBS Letters, 158(2):293-297.

1982

• MY Azbel, Y Kantor, L Verkh, A Vilenkin (1982), "Statistical analysis of DNA sequences. I", Biopolymers, 21(8):1687-1690.

• repeats

  M Meunier-Rotival, P Soriano, G Cuny, F Strauss, G Bernardi (1982), "Sequence organization and genomic distribution of the major family of interspersed repeats of mouse DNA", Proceedings of the National Academy of Sciences, 79:355-359.

• A Vilenkin, L Verkh (1982), "Statistical analysis of DNA sequences. II", Biopolymers, 21(8):1691-1693.

1981

• isochore

  G Cuny, P Soriano, G Macaya, G Bernardi (1981), "The major components of the mouse and human genomes. I. Preparation, basic properties and compositional hetergeneity", European Journal of Biochemistry, 115:227-233.

• repeats

  R deWachter (1981), "The number of repeats expected in random nucleic acid sequences and found in genes", Journal of Theoretical Biology, 91:71-98.

• R Nussinov (1981), "Nearest neighbor nucleotide patterns. Structural and biological implications", Journal of Biol Chemistry, 256(16):8458-8462.

• JC Shepherd (1981), "Method to determine the reading frame of a protein from the purine/pyrimidine genome sequence and its possible evolutionary justification", Proceedings of the National Academy of Sciences, 78(3):1596-1600.

• JC Shepherd (1981), "Periodic correlations in DNA sequences and evidence suggesting their evolutionary origin in a comma-less genetic code", Journal of Molecular Evolution, 17(2):94-102.

• period:10-11

  VB Zhurkin (1981), "Periodicity in DNA primary structure is defined by secondary structure of the coded protein", Nucleic Acids Research, 9:1963-1971.

1980

• C Fuchs (1980), "On the distribution of the nucleotides in seven completely sequenced DNAs", Gene, 10(4):371-373.

• C Fuchs, EC Rosenvold, A Honigman, W Szybalski (1980), "Identification of palindromic sequences recognized by restriction endonucleases, as based on the tabularized sequencing data for seven viral and plasmid DNAs", Gene, 10(4):357-370.

• PW Garden (1980), "Markov analysis of viral DNA/RNA sequences.", Journal of Theoretical Biology, 82(4):679-684.

• MI Granero-Porati, A Porati, L Zani (1980), "Informational parameters of an exact DNA base sequence", Journal of Theoretical Biology, 86(2):401-403.

• R Nussivov (1980), "Some rules in the ordering of nucleotides in the DNA", Nucleic Acids Research, 8(19):4545-4562.

• period:10-11

  EN Trifonov, JL Sussman (1980), "The pitch of chromatin DNA is reflected in its nucleotide sequence", Proceedings of the National Academy of Sciences, 77:3816-3820.
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