DNA correlations: preprints

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preprints

bending

AE Allahverdyan, Zh S Gevorkian (2002), "Force-induced unzipping of DNA with long-range correlated sequence", arXiv preprint, cond-mat/0210079.
[abstract]
Alexander Gorban, Tatyana Popova, Andrey Zinovyev (2004), "Four basic symmetry types in the universal 7-cluster structure of 143 complete bacterial genomic sequences", Institut des Hautes Etudes Scientifiques preprint M-04-49. [ PDF] [see also: http://www.ihes.fr/~zinovyev/7clusters]
Mark Ya Azbel (2002), "DNA denaturation as a new kind of phase transition", arXiv preprint, cond-mat/0212175.
[abstract]
Mark Ya Azbel (2003), "Long range interaction yields a new kind of phase transition", arXiv preprint, cond-mat/0302037.
[abstract]
Bo Deng (2007), "Mismatch repair error implies Chargaff's second parity rule", arXiv preprint, q-bio/0704.2191.
[abstract]
MJ Berryman, A Allison, D Abbott (2002), "Classifying ancient texts by inter-word spacing", arXiv preprint, physics/0206080.
[abstract]
MJ Berryman, A Allison, D Abbott (2004), "Stochastic evolution and multifractal classification of prokaryotes", arXiv preprint, q-bio.PE/0404008.
abstract
Thomas A. Down, Tim J. P. Hubbard (2003), "What can we learn from noncoding regions of similarity between genomes?", arXiv preprint, q-bio.GN/0312007.
[abstract]
MR Dudek, S Cebrat, M Kowalczuk, P Mackiewicz, A Nowicka, D Mackiewicz, M Dudkiewicz (2003), "Information weights of nucleotides in DNA sequences", arXiv preprint, cond-mat/0301371.
[abstract]
Diana Duplij, Steven Duplij (2003), "Determinative degree and nucleotide sequence analysis by trianders", arXiv preprint, q-bio.GN/0311014.
[abstract]
A. Eriksson, B. Mehlig (2004), "On the effect of fluctuating recombination rates on the decorrelation of gene histories in the human genome", arXiv preprint, q-bio.PE/0404020.
[abstract]
Carla Goldman, Robson Francisco de Souza (1997), "Suggested model for the origin of mosaic structure of DNA", arXiv preprint, cond-mat/9703089.
[abstract]
protein

Bailin Hao, Huiming Xie, Shuyu Zhang (2001), "Compositional representation of protein sequences and the number of Eulerian loops", arXiv preprint, physics/0103028.
[abstract]
Shahar Hod, Uri Keshet (2003), "Phase-Transition in Binary Sequences with Long-Range Correlations", arXiv preprint, cond-mat/0311483.
[abstract]
Li-Ching Hsieh, Chang-Heng Chang, Liaofu Luo, Fengmin Ji, Hoong-Chien Lee (2003), "Quasireplicas and universal lengths of microbial genomes", arXiv e-print, physics/0309006
[ abstract]
Li-Ching Hsieh, Liaofu Luo, HC Lee (2003), "Evidence for growth of microbial genomes by short segmental duplications", arXiv e-print, physics/0302031.
[ abstract]
Morten Kloster, Chao Tang (2003), "Simulation and analysis of in vitro DNA evolution", arXiv preprint, cond-mat/0301372.
[abstract]
Eugene V Korotkov, Maria A Korotkova, Nikolai A Kudryashov (2003), "Information decomposition of symbolic sequences", arXiv preprint, math/0302195.
[abstract]
D. Kugiumtzis, A. Provata (2004), "Statistical analysis of Gene and Intergenic DNA Sequences", arXiv preprint, q-bio.GN/0404024.
[abstract]
R. Mansilla, N. Del Castillo, T. Govezensky, P. Miramontes, M. Jose, G. Coch (2004), "Long-range correlation in the whole human genome", arXiv preprint, q-bio.GN/0402043.
[abstract]
M Martinis (2001), "Nonlinear dynamics in the binary DNA/RNA coding problem", arXiv preprint, physics/0101067.
[abstract]
AK Mohanty, AVSS Narayana Rao (2002), "Long range correlations in DNA sequences", arXiv preprint, physics/0202075.
[abstract]
Alexandre Rosas, Edvaldo Nogueira Jr., José F Fontanari (2002), "Multifractal analysis of DNA walks and trails", arXiv preprint, cond-mat/0209396.
[abstract]
AM Selvam (2002), "Quantumlike chaos in the frequency distributions of bases A, C, G, T in human chromosome1 DNA", arXiv preprint, physics/0211066.
[abstract]
E Tostesen (2004), "Hierarchical DNA Fluctuations and the Loop Map Diagram", arXiv preprint, q-bio.BM/0404019.
[abstract]
Liming Wang, Dan Schonfeld (2009), "Mapping equivalence for symbolic sequences: theory and applications", arXiv preprint, computer-science/information-theory, arXiv:0906.2032
[ abstract]
Fang Wu, Wei-Mou Zheng (2001), "Self-organizing approach for finding borders of DNA coding regions", arXiv preprint, physics/010248.
[abstract]
H Xie, B Hao (2002), "Visualization of K-tuple distribution in procaryote complete genomes and their randomized counterparts", preprint.
Chi Ming Yang (2003), "The naturally designed spherical symmetry in the genetic code", arXiv preprint, q-bio.BM/0309014.
[abstract]
Andrei Yu Zinovyev (2002), "Visulizing the spatial structure of triplet distributions in genetic texts", preprint (Institut des Hautes Etudes Scientifiques, France).
[PDF]