Bibliography on gene and genome duplication (2005)

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  1. KL Adams, JF Wendel (2005), "Novel patterns of gene expression in polyploid plants", Trends in Genetics, 21(10):539-543.
    [ abstract]

  2. Kirsten Bomblies and John F. Doebley (2005), "Molecular Evolution of FLORICAULA/LEAFY Orthologs in the Andropogoneae (Poaceae)", Molecular Biology and Evolution, 22(4):1082-1094.
    [abstract]

  3. Roy J Britten (2005), "The majority of human genes have regions repeated in other human genes", Proceedings of National Academy of Sciences, 102(15):5466-5470.
    [abstract]

  4. Kevin P Byrne, Kenneth H Wolfe (2005), "The Yeast Gene Order Browser: combining curated homology and syntenic context reveals gene fate in polyploid species", Genome Research, 15:1456-1461.
    [abstract]

  5. FD Ciccarelli, C von Mering, M Suyama, ED Harrington, E Izaurralde, P Bork (2005), "Complex genomic rearrangements lead to novel primate gene function", Genome Research, 15(3):343-351.

  6. James J Clarkson, K Yoong Lim, Ales Kovarik, Mark W Chase, Sandra Knapp, Andrew R Leitch (2005), "Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae)", New Phytologist, 168(1):241-252.
    [ abstract]

  7. Luca Comai (2005), "The advantages and disadvantages of being polyploid", Nature Reviews Genetics, 6:836-846.

  8. JA Cotton, RD Page (2005), "Rates and patterns of gene duplication and loss in the human genome", Proceedings of the Royal Society of London. Series B: Biological Sciences, 272(1560):277-283.

  9. Hugues Roest Crollius, Jean Weissenbach (2005), "Fish genomics and biology", Genome Research, 15:1675-1682.
    [abstract]

  10. S De Bodt, S Maere, Y Van de Peer (2005), "Genome duplication and the origin of angiosperms", Trends in Ecology & Evolution, 20:591-597. Return to text

  11. Paramvir Dehal and Jeffrey L Boore (2005), "Two rounds of whole genome duplication in the ancestral vertebrate", PLoS Biology, 3:e314.

  12. Flávio SJ de Souza, Viviana F Bumaschny, Malcolm J Low, Marcelo Rubinstein (2005), "Subfunctionalization of expression and peptide domains following the ancient duplication of the proopiomelanocortin gene in teleost fishes", Molecular Biology and Evolution, 22(12):2417-2427.
    [abstract]

  13. PCJ Donoghue, MA Purnell (2005), "Genome duplication, extinction and vertebrate evolution", Trends in Ecology & Evolution, 20:312-319.
    [ abstract]

  14. MB Hawkins, J Godwin, D Crews, P Thomas1 (2005), "The distributions of the duplicate oestrogen receptors ER-beta-a and ER-beta-b in the forebrain of the Atlantic croaker (Micropogonias undulatus): evidence for subfunctionalization after gene duplication", Proceedings of the Royal Society of London. Series B: Biological Sciences, 272(1563):633-641.

  15. X He, and J Zhang (2005), "Gene complexity and gene duplicability", Current Biology, 15:1016-1021.

  16. X He, and J Zhang (2005), "Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution", Genetics, 169:1157-1164.

  17. Austin L. Hughes (2005), "Gene duplication and the origin of novel proteins", Proceedings of National Academy of Sciences, 102(25):8791-8792.
    [abstract]

  18. I Hurley, M Hale, VE Prince (2005), "Duplication events and the evolution of segmental identity", Evolution & Development, 7:556-567.
    [ abstract]

  19. Vivian F Irish, Amy Litt (2005), "Flower development and evolution: gene duplication, diversification and redeployment", Current Opinion in Genetics & Development, 15(4):454-460.
    [ abstract]

  20. Naama M Kopelman, Doron Lancet, Itai Yanai (2005), "Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms", Nature Genetics, 37:588-589.
    [abstract]

  21. Lars Kuepfer, Uwe Sauer and Lars M Blank (2005), "Metabolic functions of duplicate genes in Saccharomyces cerevisiae", Genome Research, 15(10):1421-1430.

  22. Elena V Linardopoulou, Eleanor M Williams, Yuxin Fan, Cynthia Friedman, Janet M Young, Barbara J Trask (2005), "Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication", Nature, 437(7055):94-100.
    [ abstract]

  23. CL Lu, TC Wang, YC Lin, CY Tang (2005), "ROBIN: a tool for genome rearrangement of block-interchanges", Bioinformatics, 21(11):2780-2782.

  24. Martin A. Lysak, Marcus A. Koch, Ales Pecinka, and Ingo Schubert (2005), "Chromosome triplication found across the tribe Brassiceae", Genome Research, 15:516-525.

  25. S Maere, S De Bodt, J Raes, T Casneuf, M Van Montagu, M Kuiper, Y Van de Peer (2005), "Modeling gene and genome duplications in eukaryotes", Proceedings of National Academy of Sciences, 102(15):5454-5459.

  26. PW Messer, M Lassig, PF Arndt (2005), "Universality of long-range correlations in expansion randomization systems", Journal of Statistical Mechanics: Theory and Experiment, 10:10004.
    [ abstract]

  27. A Meyer, Y Van de Peer (2005), "From 2R to 3R: evidence for a fish-specific genome duplication (FSGD)", Bioessays, 27:937-945.

  28. Michele Morgante, Stephan Brunner, Giorgio Pea, Kevin Fengler, Andrea Zuccolo, Antoni Rafalski (2005), "Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize", Nature Genetics, 37:997-1002.
    [abstract]

  29. Richard A Notebaart, Martijn A Huynen, Bas Teusink, Roland J Siezen and Berend Snel (2005), "Correlation between sequence conservation and the genomic context after gene duplication", Nucleic Acids Research, 33(19):6164-6171.
    [abstract]

  30. Dietrich Ober (2005), "Seeing double: gene duplication and diversification in plant secondary metabolism", Trends in Plant Science, 10(9):444-449.
    [ abstract]

  31. RP Olinsky, LG Lundin, F Hallbook (2005), "Genome duplication-driven evolution of gene families: insights from the formation of the insulin family", Annals of the New York Academy of Sciences, 1040(1):426-428.
    [ abstract]

  32. G Panopoulou, AJ Poustka (2005), "Timing and mechanism of ancient vertebrate genome duplications - the adventure of a hypothesis", Trends in Genetics, 21:559-567.

  33. AH Paterson, JE Bowers, Y van de Peer, K Vandepoele (2005), "Ancient duplication of cereal genomes" (commentary), New Phytologist, 165(3):658-661.

  34. Jose B. Pereira-Leal and Sarah A. Teichmann (2005), "Novel specificities emerge by stepwise duplication of functional modules", Genome Research, 15: 552-559.

  35. S Rastogi, DA Liberles (2005), "Subfunctionalization of duplicated genes as a transition state to neofunctionalization", BMC Evolutionary Biology, 5:28.

  36. Hugh M. Robertson (2005), "Two large families of chemoreceptor genes in the nematodes Caenorhabditis elegans and Caenorhabditis briggsae reveal extensive gene duplication, diversification, movement, and intron loss", Genome Research, 8(5):449-463.
    [abstract]

  37. David Sankoff, Matthew Mazowita (2005), "Stability of rearrangement measures in the comparison of genome sequences", Proceedings of the Ninth International Conference on Research in Computational Molecular Biology , pp.?-?

  38. AJ Sharp, DP Locke, SD McGrath, Z Cheng, JA Bailey, RU Vallente, LM Pertz, RA Clark, S Schwartz, R Segraves, VV Oseroff, DG Albertson, D Pinkel, EE Eichler (2005), "Segmental duplications and copy-number variation in the human genome", American Journal of Human Genetics, 77(1):78-88.

  39. Pamela S Soltis (2005) "Ancient and recent polyploidy in angiosperms" (commentary), New Phytologist, 166(1):5-8.

  40. E Tuzun, AJ Sharp, JA Bailey, R Kaul, VA Morrison, LM Pertz, E Haugen, H Hayden, D Albertson, D Pinkel, MV Olson, EE Eichler (2005), "Fine-scale structural variation of the human genome", Nature Genetics, 37(7):727-732.

  41. Ambro van Hoof (2005), "Conserved functions of yeast genes support the duplication, degeneration and complementation model for gene duplication", Genetics, 171:1455-1461.
    [abstract]

  42. Gert-Jan B van Ommen (2005), "Frequency of new copy number variation in humans" (correspondence), Nature Genetics, 37:333-334.
    [abstract]

  43. Xiyin Wang, Xiaoli Shi, Bailin Hao, Song Ge, Jingchu Luo (2005), "Duplication and DNA segmental loss in the rice genome: implications for diploidization", New Phytologist, 165:937-946.
    [ abstract]

  44. M Woolfit, KH Wolfe (2005), "The gene duplication that greased society's wheels" (news and views), Nature Genetics, 37:566-567.

  45. Peng Yin, Alexander J Hartemink (2005), "Theoretical and practical advances in genome halving", Bioinformatics, 21:869-879.
    [ abstract]

  46. Krithika Yogeeswaran, Amy Frary, Thomas L. York, Alison Amenta, Andrew H. Lesser, June B. Nasrallah, Steven D. Tanksley, and Mikhail E. Nasrallah (2005), "Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana", Genome Research, 15:505-515.

  47. Jun Yu, et al. (2005) "The genomes of Oryza sativa: a history of duplications", PLoS Biology, 3(2):e38.
    [ abstract]

  48. Liqing Zhang, Henry H S Lu, Wen-yu Chung, Jing Yang, Wen-Hsiung Li (2005), "Patterns of segmental duplication in the human genome", Molecular Biology and Evolution, 22(1):135-141.