computational gene recognition

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+ 1990

  1. promoter/TF
    P Bucher (1990), "Weight matrix descriptions of four eukariotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences", Journal of Molecular Biology, 212:563-578.

  2. JM Claverie, I Sauvaget, L Bougueleret (1990), "k-tuple frequency analysis: from intron/exon discrimination to t-cell epitope mapping", Methods in Enzymology, 183:237-252. (Molecular Evolution: Computer Analysis of Protein and Nucleicic Acid Sequences, special issue, ed. R.F. Doolittle)

  3. CA Fields, CA Soderlund (1990), "GM: a practical tool for automating DNA sequence analysis", Computer Applications in Biosciences, 6:263-270.

  4. MS Gelfand (1990), "Computer prediction of exon-intron structure of mammalian pre-mRNAs", Nucleic Acids Research, 18:5865-5869.
    [ abstract ] [ Medline entry]

  5. MS Gelfand (1990), "Global methods for the computer prediction of protein-coding regions in nucleotide sequences", Biotechnology Software, 7:3-11.

  6. promoter/TF
    D Ghosh (1990), "A relational database of transcription factors", Nucleic Acids. Research, 18:1749-1756.

  7. splicing
    N Harris, P Senapathy (1990), "Distribution and consensus of branch point signals in eukaryotic genes: A computerized statistical analysis", Nucleic Acids Research, 18: 3015-3019.

  8. AK Konopka (1990), "Towards mapping functional domains and indiscriminantly sequenced nucleic acids: a computational approach", in Human Genome Initiative and DNA Recombination , eds. RH Sarma and MH Sarma , pages 113-125 (Adenine Press, Guiderland NY).

  9. AK Konopka, J Owens (1990), "Complexity charts can be used to map functional domains in DNA", Gene Anal. Technical Application, 7: 35-38.

  10. AK Konopka, J Owens (1990), "Non-contiguous patterns and compositional complexity of nucleic acid sequences", in Computers and DNA eds. G Bell and TG Marr, pages 147-155. (Addison-Wesley Longman, Redwood City, CA).

  11. Marilyn Kozak (1990), "Downstream secondary structure facilitates recognition of initiator codons by eukaryotic ribosomes", Proceedings of the National Academy of Sciences, 87:8301-8305.

  12. AS Lapedes, C Barnes, C Burks, RM Farber, KM Sirotkin (1990), "Application of neural networks and other machine learning algorithms to DNA sequence analysis", in Computers and DNA eds. G Bell and TG Marr, pages ?-? (Addison-Wesley Longman, Redwood City, CA).

  13. B Levinson, S Kenwrick, D Lakich, G Hammonds Jr., J Gitschier (1990), "A transcribed gene in an intron of the human factor VIII gene", Genomics, 7:1-11.

  14. promoter/TF
    J Locker, G Buzard (1990), "A dictionary of transcription control sequences", Journal of DNA Sequencing and Mapping 1: 3-11.

  15. splicing
    RJ Mural, RC Mann, EC Uberbacher (1990), "Pattern recognition in DNA sequences: The intron-exon junction problem", in The First International Conference on Electrophoresis, Supercomputing and the Human Genome , eds. CR Cantor and HA Lim, pages 164-172. (World Scientific, London).

  16. promoter/TF
    R Nussinov (1990), "Sequence signals in eukaryotic upstream regions", Critical Review of Biochem Mol Biol., 25(3):185-224.

  17. O Seely Jr., DF Feng, DW Smith, D Sulzbach, DF Doolittle (1990), "Construction of a facsimile data set for large genome sequence analysis", Genomics, 8:71-82.

  18. splicing
    P Senapathy, MB Shapiro, NL Harris (1990), "Splice junctions, branch point sites, and exons: sequence statistics, identification, and applications to genome project", Methods in Enzymology, 183:252-278.

  19. HO Smith, TM Annau, S Chandresegaran (1990), "Finding sequence motifs in groups of functionally related proteins", Proceedings of the National Academy of Sciences, 87: 826-830.

  20. RF Smith, TF Smith (1990), "Automatic generation of primary sequence patterns from sets of related protein sequences", Proceedings of the National Academy of Sciences, 87: 118-122.

  21. R Staden (1990), "Finding protein coding regions in genomic sequences", Methods in Enzymology, 183: 163-179.

  22. GD Stormo (1990), "Consensus patterns in DNA", Methods in Enzymology, 183: 211-220.