computational gene recognition

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+ 1992

  1. A Bairoch (1992) "PROSITE: A dictionary of sites and patterns in proteins", Nucleic Acids Research , 20:2013-2018.

  2. P Bork, C Ouzounis, C Sander, M Scharf, R Schneider, E Sonnhammer (1992), "What's in a genome?", Nature, 358:287

  3. P Bork, C Ouzounis, C Sander, M Scharf, R Schneider, E Sonnhammer, (1992), "Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III", Protein Sciences, 1: 1677-1690.

  4. LR Cardon, GD Stormo (1992), "Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments", Journal of Molecular Biology, 223: 159-170.

  5. similarity
    JM Claverie (1992), "Identifying coding exons by similarity search: Alu-derived and other potentially misleading protein sequences", Genomics, 12: 838-841.
    [ abstract]

  6. JR Einstein, RJ Mural, X Guan, EC Uberbacher (1992), "Computer-based construction of gene models using the GRAIL gene assembly program", Oak Ridge National Laboratory report TM-12174.

  7. J Engelbrecht, S Knudsen, S Brunak (1992), "G/C rich tract in 5' end of human introns", Journal of Molecular Biology, 227: 108-113.

  8. promoter/TF
    S Faisst, S Meyer (1992), "Compilation of vertebrate-encoded transcription factors", Nucleic Acids Research, 20:3-26.

  9. RB Farber, AS Lapedes, KM Sirotkin (1992), "Determination of eukaryotic protein coding regions using neural networks and information theory", Journal of Molecular Biology, 226: 471-479.

  10. splicing
    GA Fichant (1992), "Constraints acting on the exon positions of the splice site sequences and local amino acid composition of the protein", Human Molecular Genetics, 1(4):259-267.
    [ Medline entry]

  11. JW Fickett, CS Tung (1992), "Assessment of protein coding measures", Nucleic Acids Research, 20: 6441-6450.
    [abstract] [abstract]

  12. MS Gelfand (1992), "Prediction of protein-coding regions in DNA of higher eukaryotes", in Mathematical Methods of Analysis of Biopolymer Sequences (DIMACS series in discrete mathematics and theoretical computer science, Vol 8) (American Mathematical Society, Providence, RI), pp. 87-98.

  13. MS Gelfand (1992), "Statistical analysis and prediction of the exonic structure of human genes", Journal of Molecular Evolution, 35(3):239-52.
    [ abstract] [ Medline entry]

  14. R Guigo, S Knudsen, N Drake, T Smith (1992), "Prediction of gene structure", Journal of Molecular Biology, 226, 141-157.

    [ Medline entry] [supplement material: http://genome.imim.es/geneid.html (geneid)]

  15. JD Hirst, MJE Sternberg (1992), "Prediction of structural and functional features of protein and nucleic acid sequences by artificial neural networks", Biochemistry, 31: 7211-7219.

  16. GB Hutchinson, MR Hayden (1992), "The prediction of exons through an analysis of spliceable open reading frames", Nucleic Acids Research, 20: 3453-3462.
    [abstract]

  17. alternative-splicing
    M McKeown (1992), "Alternative mRNA splicing", Annual Review of Cellular Biology, 8: 133-155.

  18. splicing
    SM Mount, C Burks, G Stormo, J Hertz, C Fields (1992), "Splicing signals in Drosophila: intron size, information content, and consensus sequences", Nucleic Acids Research, 20:4255-4262.

  19. promoter/TF
    R Nussinov (1992), "DNA sequences at and between the GC and TATA boxes: potential DNA looping and spatial juxtapositioning of the protein factors", Journal of Biomolecular Structure and Dynamics, 9(6):1213-1237.

  20. A Ogiwara, I Uchiyama, Y Seto, M Kanehisa (1992), "Construction of a dictionary of sequence motifs that characterize groups of related proteins", Protein Engineering, 5: 479-488.

  21. DB Searls (1992), "The linguistics of DNA", American Scientist, 80: 579-591.

  22. JW Shavlik, GG Towell, MO Noordewier (1992), "Using neural networks to refine biological knowledge", International Journal of Genome Research, 1: 81-107.

  23. DC Shields, DG Higgins, PM Sharp (1992), "GCWIND: a microcomputer program for identifying open reading frames according to codon positional G+C content", Computer Applications in Biosciences, 8(5):521-523.

  24. C Soderlund, P Shanmugam, O White, C Fields (1992), " ", Proceedings of the 25th Hawaii International Conference on System Sciences, eds. V Milutinovic, B Shriver (IEEE Computer Society Press), pp.653-662.

  25. translation
    E Wahle, W Keller (1992), "The biochemistry of 3' end cleavage and polyadenylation of messenger RNA precursors", Annual Review of Biochemistry, 61: 419-40.