databases (sorted alphabetically by their source)

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• Consiglio Nazionale delle Ricerche, Bari, Italy
  • UTRDB (Database of Untranslated Regions of Eukaryotic mRNA) http://bigarea.area.ba.cnr.it:8000/BioWWW/#UTRdb

• European Bioinformatics Institute (EBI), Cambridge, UK

  • EMBL (European Molecular Biology Lab Database) http://www.ebi.ac.uk/embl.html

  • EST-Confirmed Human Splice Sites http://www.ebi.ac.uk/~thanaraj/splice.html

  • AltExon https//industry.ebi.ac.uk/altExtron/
    as well as http://www.bit.uq.edu.au/altExtron/

• Univ. of Gent, Belgium (Department of Genetics)
  • PLANT-CARE (Plant Cis-Acting Regulatory Element) http://sphinx.rug.ac.be:8080/PlantCARE/index.htm
    

• Gesellschaft Biotechnologische Forschung (GBF), Braunschweig, Germany ( Molecular Bioinformatics of Gene Regulation Project)
  • TRANSFAC (Transcription Factor Database) http://transfac.gbf-braunschweig.de/TRANSFAC/index.html
    ( mirror site at Weizmann Institute )

• Georgetown Univ Medical Center, USA
  • PIR (Protein Information Resource) http://www-nbrf.georgetown.edu/pir/

• Human Genome Mapping Project Resource Centre, UK
  • GENESAFE http://www.hgmp.mrc.ac.uk/Genesafe/

• Infobiogen, France
  • DBCAT (Catalog of Biological Databases) http://www.infobiogen.fr/services/dbcat/

• Institute for Transcriptional Informatics, VA, USA
  • OOTFD (Object-Oriented Transcription Factor Database) http://www.ifti.org/cgi-bin/ifti/ootfd.pl
    

• The Jackson Laboratory, USA ( Mouse Genome Informatics )
  • MGD (Mouse Genome Database) http://www.informatics.jax.org/doc/aboutMGD.html
  • GXD (Gene Expression Database) http://www.informatics.jax.org/doc/aboutGXD.html

• Kyoto University, Japan (Institute for Chemical Research)
  KEGG (Kyoto Encyclopedia of Genes and Genomes) http://www.genome.ad.jp/kegg/

• Lawrence Berkeley National Laboratory, CA, USA
  • Alternative Splicing Database http://hattrick.lbl.gov:8888/alt/

• Max-Planck-Instut fur Biochemie, Munich, Germany
  • MIPS (Munich Information Center for Protein Sequences) http://www.mips.biochem.mpg.de/

• Medical Research Council (MRC), UK ( Human Genetics Unit, Edinburgh)
  • The Mouse Atlas and Gene Expression Database http://genex.hgu.mrc.ac.uk/

• Uniersidad Nacional Autonoma de Mexico, Mexico (Centro de Investigacion sobre Fijacion, Lab of Computational Biology)
  • REGULONDB (Database on Transcriptional Regulation in E. coli) http://www.cifn.unam.mx/Computational_Biology/regulondb/

• National Center for Genome Resources, NM, USA
  GSDB (Genome Sequence Database) http://www.ncgr.org/gsdb/

• National Institute of Agrobiological Resources, Tsukuba, Japan
  • PLACE (Plant Cis-Acting Regulatory DNA Elements) http://www.dna.affrc.go.jp/htdocs/PLACE/
    
  • CUTG (Codon Usage Tabulated from GenBank) http://www.dna.affrc.go.jp/~nakamura/CUTG.html
    

• National Institute of Genetics, Japan (Center for Information Biology)
  • DNA Data Bank of Japan http://www.ddbj.nig.ac.jp/

• National Institute of Genetics, Japan (Gene Network Lab)
  • NEXTDB (Nematode Expression Pattern DataBas) http://watson.genes.nig.ac.jp:8080/db/index.html

• National Institute of Health, USA (NCBI, National Library of Medicine )
  • COG (Clusters of Orthologous Groups) http://www.ncbi.nlm.nih.gov/COG/
  • DBEST (Database of EST) http://www.ncbi.nlm.nih.gov/dbEST/index.html
  • GENBANK http://www.ncbi.nlm.nih.gov/Web/Genbank/index.html
  • UNIGENE (Unique Gene) http://www.ncbi.nlm.nih.gov/UniGene/index.html

• National Institute of Health, USA (National Human Genome Research Institute)
  • Histone Sequence Database http://genome.nhgri.nih.gov/histones/

• New England Biolabs, MA, USA
  • INBASE (Intein Database - protein splicing) http://www.neb.com/neb/inteins.html

• Univ. of Otago, New Zealand (Biochemistry Department)
  • Translational Signal Database http://biochem.otago.ac.nz:800/Transterm/homepage.html

• Pangea Systems, Inc. CA, USA
  • ECOCYC (Encyclopedia of E. coli Genes and Metabolism) http://ecocyc.PangeaSystems.com/ecocyc/

• Univ of Pennsylvania, USA (Computational Biology and Informatics Lab, School of Medicine)
  • EPODB (Genes involved in Erythropoesis) http://www.cbil.upenn.edu/epodb/
  • LENS (Linking ESTs and their associated Name Space database http://agave.humgen.upenn.edu/lens/index.html
  • MTIR (Muscle Tissue Regulatory Elements) http://agave.humgen.upenn.edu/MTIR/HomePage.html
    (maintained by Jim Fickett of SmithKline Beecham)
  • Parasite Databases of Clustered ESTs http://www.cbil.upenn.edu/ParaDBs/

• Poland Academy of Sciences, Poznan, Poland (Institute of Bioorganic Chemistry)
  • Database of non-coding mRNA http://www.man.poznan.pl/5SData/ncRNA/index.html

• Proteome Inc. MA, USA
  • YPD (Yeast Proteome Database) http://www.proteome.com/YPDhome.html

• Russian Academy of Sciences, Siberian branch, Russia (Institute of Cytology and Genetics)
  • TRRD (nscription Regulatory Regions Databas) http://www.bionet.nsc.ru/trrd/

• Sanger Centre, UK ( Computational Genomic , Informatics Division )
  • INFOGENE (Known gene structure and function database) http://genomic.sanger.ac.uk/bla/infogen.shtml

• Univ. of Santa Cruz, USA (Ares Lab)
  • Location and Structure of Splicesonal Class of Introns in Yeast http://www.cse.ucsc.edu/research/compbio/yeast_introns.html

• Stanford University, USA (Department of Genetics, School of Medicine)
  • SGD (Saccharomyces Genome Database) http://genome-www.stanford.edu/Saccharomyces/

• Swiss Institute of Bioinformatics, Switzerland (EXPASY server of molecular biology)
  • SWISS-PROT (a curated protein sequence database with a high level of annotations) http://www.expasy.ch/sprot/

• Swiss Institute for Experimental Cancer Research, Switzerland (Bioinformatics Group)
  • EPD (Eukaryotic Promoter Database) http://www.epd.isb-sib.ch/
    

• Univ. of Washington, USA (Molecular Oncology and Development Team)
  • PEDB (Prostate Expression Database) http://chroma.mbt.washington.edu/PEDB/