Bibliography: Linkage Disequilibrium Analysis (1998)

1998

1. TDT

   Laurent Abel, Bertram Müller-Myhsok (1998), "Maximum-likelihood expression of the transmission/disequilibrium test and power considerations" (Letters to the editor), American Journal of Human Genetics , 63:664-667.

2. David B Allison, Mark Beasley (1998), "Method and computer program for controlling the family-wise alpha rate in gene association studies involving multiple phenotypes", Genetic Epidemiology, 15, 87-101.
   [abstract]

3. TDT

   Michael Boehnke, Carl D Langefeld (1998), "Genetic association mapping based on discordant sib pairs: the discordant-alleles test", American Journal of Human Genetics , 62:950-961.
   [abstract] [PDF]

4. TDT

   Nicola H Chapman, Ellen M Wijsman (1998), "Genome screen using linkage disequilibrium tests: optimal marker characteristics and feasibility", American Journal of Human Genetics , 63:1872-1885.

5. VG Cheung, JP Gregg, KJ Gogolin-Ewens, J Bandong, CA Stanley, L Baker, MJ Higgins, NJ Nowak, TB Shows, WJ Ewens, SF Nelson, RS Spielman (1998), "Linkage-disequilibrium mapping without genotyping", Nature Genetics, 18(3):225-230.
   [abstract]

6. MN Chiano, DG Clayton (1998), "Fine genetic mapping using haplotype analysis and the missing data problem", Annals of Human Genetics, 62:55-60.

7. A Collins, NE Morton (1998), "Mapping a disease locus by allelic association", Proceedings of National Academy of Sciences, 95:1741-1745.
   [abstract] [PDF]

8. population-structure

   Albert de la Chapelle, Fred Wright (1998), "Linkage disequilibrium mapping in isolated populations: the example of Finland revisited", Proceedings of National Academy of Sciences, 95:12416-12423.
   [PDF]

9. A di Rienzo, P Donnelly, C Toomajian, B Sisk, A Hill, G Haines, M Petzl-Erler, D D Barch (1998), "Heterogeneity of microsatellite mutations within and between loci, and implications for human demographic histories", Genetics, 148:1269-1284.

10. Robert C Elston (1998), "Linkage and association", Genetic Epidemiology, 15:565-576.
    [abstract]

11. Laurent Excoffier, Montgomery Slatkin (1998), "Incorporating genotypes of relatives into a test of linkage disequilibrium", American Journal of Human Genetics, 62, 171-180.
    [PDF]

12. TDT

    Warren J Ewens, Richard S Spielman (1998), "Reply to Laird et al.", American Journal of Human Genetics,63:1915-1916.

13. M Farrall, DE Weeks (1998), "Mutational mechanisms for generating microsatellite allele-frequency distributions: an analysis of 4558 markers", American Journal of Human Genetics, 62:1260-1262.

14. F. Peter Guengerich (1998), "The Environmental Genome Project: Functional Analysis of Polymorphisms", Environmental Health Perspectives, 106(7):365-368.

15. Jinko Graham (1998), Disequilibrium Fine-Mapping of a Rare Allele via Coalescent Models of Gene Ancestry. Ph.D Thesis, Department of Biostatistics, University of Washington.

16. Jinko Graham, Elizabeth A Thompson (1998), "Disequilibrium likelihoods for fine-scale mapping of a rare allele", American Journal of Human Genetics, 63(5):1517-1530.
    [PDF]

17. TDT

    Steve Horvath, Nan M Laird (1998), "A discordant-sibship test for disequilibrium and linkage: no need for parental data", American Journal of Human Genetics,63:1886-1897.

18. TDT

    NL Kaplan, ER Martin, RW Morris, BS Weir (1998), "Marker selection for the transmission/disequilibrium test, in recently admixed populations", American Journal of Human Genetics,62:703-712.

19. MJ Khoury, Q Yang (1998), "The future of genetic studies of complex human diseases: an epidemiologic perspective", Epidemiology, 9:350-354.

20. KK Kidd, B Morar, CM Castiglione, H Zhao, AJ Pakstis, WC Speed, B Bonne-Tamir, RB Lu, D Goldman, C Lee, YS Nam, DK Grandy, T Jenkins, JR Kidd (1998), "A global survey of haplotype frequencies and linkage disequilibrium at the DRD2 locus", Human Genetics, 103:211-227.
    [PDF]

21. TDT

    Nan M Laird, Deborah Blacker, Marsha Wilcox (1998), "The sib transmission/disequilibrium test is a Mantel-Haenszel test" (letters to the editor), American Journal of Human Genetics,63:1915.

22. Laura C Lazzeroni (1998), "Linkage disequilibrium and gene Mmpping: an empirical least-squares approach ", American Journal of Human Genetics, 62, 159-170.
    [PDF]

23. TDT

    Laura C Lazzeroni, Kenneth Lange (1998), "A conditional inference framework for extending the transmission/disequilibrium test", Human Heredity, 48, 67-81.

24. Christine Lonjou, Andrew Collins, Richard S Ajioka, Lynn B Jorde, James P Kushner, Newton Morton (1998), "Allelic association under map error and recombinational heterogeneity: A tale of two cities", Proceedings of National Academy of Sciences,95(19), 11366-11370.
    [PDF ]

25. ZW Luo (1998), "Detecting linkage disequilibrium between a polymorphic marker locus and a trait locus in natural populations", Heredity, 80:198-208.

26. TDT

    RB Martin, M Alda, CJ MacLean (1998), "Parental genotype reconstruction: applications of haplotype relative risk to incomplete parental data", Genetic Epidemiology, 15:471-490.

27. TDT

    RE McGinnis (1998), "Hidden linkage: a comparison of the affected sib pair (ASP) test and transmission/disequilibrium test (TDT)", Annals of Human Genetics, 62(2):159-179.

28. population-structure

    PM McKeigue (1998), "Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture", American Journal of Human Genetics, 63:241-251.

29. SA Monks, NL Kaplan, BS Weir (1998) "A comparative study of sibship tests of linkage and/or association", American Journal of Human Genetics, 63(5):1507-1516.
    [PDF]

30. NE Morton, A Collins (1998), "Tests and estimates of allelic association in complex inheritance", Proceedings of National Academy of Sciences,95(19),11389-11393.
    [PDF]

31. TDT

    HH Muller, A Ziegler (1998), "Sequential testing using the transmission-disequilibrium test", in Medizinische Informatik, Biometrie und Epidemiologie, eds. E Greiser, M Wischnewksy. pp.467-470.

32. Dahlia M Nielsen, MG Ehm, BS Weir (1998), "Detecting marker-disease association by testing for Hardy-Weinberg disequilibrium at a marker locus", American Journal of Human Genetics, 63(5):1531-1540.
    [PDF]

33. population-structure

    C Ober, NJ Cox (1998), "Mapping genes for complex traits in founder populations", Clinical & Experimental Allergy, 28:101-105.

34. MA Pericak-Vance (1998), "Linkage disequilibrium and allelic association", in Approaches to Gene Mapping in Complex Human Diseases , eds. JL Haines, MA Pericak-Vance (Willey-Liss), pp.323-333.

35. Bruce Rannala, Montgomery Slatkin (1998), "Likelihood analysis of disequilibrium mapping, and related problems", American Journal of Human Genetics, 62(2), 459-473.
    [abstract] [PDF]

36. TDT

    Neil Risch, Jun Teng (1998), "The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases I. DNA pooling", Genome Research , 8(12):1273-1288.
    [abstract]

37. TDT

    Daniel J Schaid (1998), "Transmission disequilibrium, family controls, and great expectations", American Journal of Human Genetics, 63:935-941.
    [PDF]

38. TDT

    Daniel J Schaid, Charles Rowland (1998), "Use of parents, sibs, and unrelated controls for detection of associations between genetic markers and disease", American Journal of Human Genetics, 63(5):1492-1506.
    [PDF]

39. SH Shaw, MM Carrasquillo, C Kashuk, EG Puffenberger, A Chakravarti (1998), "Allele frequency distributions in pooled DNA samples: applications to mapping complex disease genes", Genome Research, 8:111-123.

40. population-structure

    VC Sheffield, EM Stone, R Carmi (1998), "Use of isolated inbred human populations for identification of disease genes", Trends in Genetics, 14:391-396.

41. TDT

    Richard S Spielman, Warren J Ewens (1998), "A sibship test for linkage in the presence of association: the sib transmission/disequilibrium test", American Journal of Human Genetics, 62, 450-458.
    [abstract] [PDF]

42. TDT

    F Sun, W Flanders, Q Yang, M Khoury (1998), "A new method for estimating the risk ratio in studies using case-parental control design", American Journal of Epidemiology, 148:902-909.

43. JD Terwilliger, KM Weiss (1998), "Linkage disequilibrium mapping and complex disease: fantasy or reality?", Current Opinion in Biotechnology, 9(6):578-594.
    [abstract] [PDF]

44. population-structure

    JD Terwilliger, S Zollner, M Laan, S Paabo (1998), "Mapping genes through the use of linkage disequilibrium generated by genetic drift: 'drift mapping' in small populations with no demographic expansion", Human Heredity, 48:138-154.

45. EA Thompson (1998), "Inferring gene ancestry: estimating gene descent", International Statistical Review, 66:29-40.

46. S Wallenstein, SE Hodge, A Weston (1998), "Logistic regression model for analyzing extended haplotype data", Genetic Epidemiology, 5(2):173-181.

47. DG Wang, JB Fan, CJ Siao, A Berno, P Young, R Sapolsky, G Ghandour, N Perkins, E Winchester, J Spencer, L Kruglyak, L Stein, L Hsie, T Topaloglou, E Hubbell, E Robinson, M Mittmann, MS Morris, N Shen, D Kilburn, J Rioux, C Nusbaum, S Rozen, TJ Hudson, R Lipshutz, M Chee, ES Lander (1998), "Large-scale identification, mapping, and genotyping of single-nucleotide polymorphisms in the human genome", Science, 280(5366):1077-1082.

48. CR Weinberg, AJ Wilcox, RT Lie (1998), "A log-linear approach to case-parent-triad data: assessing effects of disease genes that act either directly or through maternal effects and that may be subject to parental imprinting", American Journal of Human Genetics , 62:969-978.

49. TDT

    JC Whittaker, AP Morris, RN Curnow (1998), "Using information from both parents when testing for association between marker and disease loci", Genetic Epidemiology, 15(2), 193-200.
    [abstract]

50. Priya J Wickramaratne, Susan E Hodge, Alessandro Rotondo (1998), "Association studies in the presence of comorbidity: Design and analysis", American Journal of Medical Genetics, 81(5), 355-360.

51. TDT

    AJ Wilcox, CR Weinberg, RT Lie RT (1998), "Distinguishing the effects of maternal and offspring genes through studies of 'case-parent triads' ", American Journal of Epidemiology, 148:893-901.

52. TDT

    MM Xiong, J Krushkal, E Boerwinkle (1998), "TDT statistics for mapping quantitative trait loci", Annals of Human Genetics, 62:431-452.