Bibliography: Linkage Disequilibrium Analysis (1999)

Some presentations at the 1999 Annual Meeting of International Genetic Epidemiology Society (IGES)

1999

1. quantitative-trait

   DB Allison, M Heo, N Kaplan, ER Martin (1999), "Sibling-based tests of linkage and association for quantitative traits ", American Journal of Human Genetics , 64:1754-1764.
   [PDF]

2. Miron Baron (1999), "Candidate genes and behavioral traits - candidly!" (letter to the editor), Archives of General Psychiatry, 56:582-583.

3. AJ Brookes (1999), "The essence of SNPs", Gene, 234:177-186.

4. TDT

   TG Bruun, H Ewald (1999), "Selection bias of susceptibility genes possible when using parent-offspring triads in genetic association studies", Molecular Psychiatry, 4:415-416.

5. TDT

   Nicola J Camp (1999), "Genomewide transmission/disequilibrium testing: a correction" (Letters to the editor), American Journal of Human Genetics , 64:1485-1487.

6. N Caporaso, N Rothman, S Wacholder (1999), "Case-control studies of common alleles and environmental factors", Journal of the National Cancer Institute Monographs, 26:25-30.

7. Michele Cargill, David Altshuler, James Ireland, Pamela Sklar, Kristin Ardlie, Nila Patil, Charles R. Lane, Esther P. Lim, Nilesh Kalyanaraman, James Nemesh, Liuda Ziaugra, Lisa Friedland, Alex Rolfe, Janet Warrington, Robert Lipshutz, George Q Daley, Eric S. Lander (1999), "Characterization of single-nucleotide polymorphisms in coding regions of human genes", Nature Genetics, 22:231-238.

8. A Chakravarti (1999), "Population genetics -- making sense out of sequences", Nature Genetics, 21 (suppl):56-60.

9. TDT

   D Clayton (1999), "A generalization of the transmission/disequilibrium test for uncertain-haplotype transmission", American Journal of Human Genetics , 65(4):1170-1177.
   [ Medline entry] [PDF] [TRANSMIT program]

10. TDT

    D Clayton, H Jones (1999), "Transmission/disequilibrium tests for extended marker haplotypes", American Journal of Human Genetics , 65(4):1161-1169.
    [ Medline entry] [PDF] [TDTHAP program (R library)]

11. A Collins, C Lonjou, NE Morton (1999), "Genetic epidemiology of single-nucleotide polymorphisms", Proceedings of National Academy of Sciences, 96(26):15173-15177.

12. Heather J Cordell, Robert C Elston (1999), "Fieller's theorem and linkage disequilibrium mapping", Genetic Epidemiology , 17:237-252.

13. B Devlin, K Roeder (1999), "Genomic control for association studies", Biometrics, 55:997-1004.
    [GCONTROL program]

14. P Donnelly (1999) "The coalescent and microsatellite variability", In Microsatellites: Evolution and Applications , eds. D Goldstein, C Schlotterer (Oxford University Press), pp. 116-128.

15. applications

    MA Escamilla, LA McInnes, M Spesny, VI Reus, SK Service, N Shimayoshi, DJ Tyler, S Silva, J Molina, A Gallegos, L Meza, et. al. (1999), "Assessing the feasibility of linkage disequilibrium methods for mapping complex traits: an initial screen for bipolar disorder loci on chromosome 18", American Journal of Human Genetics , 64:1670-1678.
    [PDF]

16. quantitative-trait

    DW Fulker, SS Cherney, PC Sham, JK Hewitt (1999), "Combined linkage and association sib-pair analysis for quantitative traits", American Journal of Human Genetics , 64:259-267.
    [PDF]

17. M Garcia-Closas, JH Lubin (1999), "Power and sample size calculations in case-control studies of gene-environmental interactions: comments on different approaches", American Journal of Epidemiology, 148:689-693.

18. quantitative-trait

    TDT

    V George, HK Tiwari, X Zhu, RC Elston (1999), "A test of transmission/disequilibrium for quantitative traits in pedigree data, by multiple regression", American Journal of Human Genetics , 65(1):236-245.

19. SE Hodge, M Boehnke, MA Spence (1999), "Loss of information due to ambiguous haplotyping of SNPs" (correspondence), Nature Genetics, 21(4):360-361.
    [PDF]

20. J Huang, Y Jiang (1999), "Linkage detection adaptive to linkage disequilibrium: the disequilibrium maximum-likelihood Binomial test for affected-sibship data", American Journal of Human Genetics , 65:1741-1759.
    [PDF]

21. TDT

    Michael Knapp (1999), "The transmission/disequilibrium test and parental-genotype reconstruction: the reconstruction-combined transmission/disequilibrium test", American Journal of Human Genetics , 64:861-870.
    [PDF]

22. TDT

    Michael Knapp (1999), "A note on power approximations for the transmission/disequilibrium test", American Journal of Human Genetics , 64:1177-1185.
    [PDF] [TDTPOWER program (SAS macro)]

23. TDT

    Michael Knapp (1999), "Using exact P values to compare the power between the reconstruction-combined transmission/disequilibrium test and the sib transmission/disequilibrium test" (letters to the editor), American Journal of Human Genetics , 65(4):1208-1210.
    [RC-TDT program (SAS macro) ]

24. population-structure

    L Kruglyak (1999), "Genetic isolates: separate but equal?", Proceedings of National Academy of Sciences, 96:1170-1172.

25. L Kruglyak (1999), "Prospects for whole-genome linkage disequilibrium mapping of common disease genes", Nature Genetics, 22(2):139-144.

26. AD Long, CH Langley (1999), "The power of association studies to detect the contribution of candidate genetic loci to variation in complex traits", Genome Research, 9:720-731.
    [PDF]

27. C Lonjou, A Collins, NE Morton (1999), "Allelic association between marker loci", Proceedings of National Academy of Sciences, 96:1621-1626.
    [PDF]

28. Nature Genetics (1999), "Freely associating" (editorial), Nature Genetics, 22:1-2.
    [html] [PDF]

29. quantitative-trait

    DM Nielsen, BS Weir (1999), "A classical setting for associations between markers and loci affecting quantitative traits", Genome Research, 74:271-277.

30. quantitative-trait

    GP Page, CI Amos (1999), "Comparison of linkage-disequilibrium methods for localization of genes influencing quantitative traits in humans ", American Journal of Human Genetics , 64:1194-1206.
    [PDF]

31. population-structure

    JK Pritchard, NA Rosenberg (1999), "User of unlinked genetic markers to detect population stratification in association studies", American Journal of Human Genetics , 65(1):220-228.
    [PDF]

32. TDT

    Daniel J Schaid (1999), "Likelihoods and TDT for the case-parents design", Genetic Epidemiology, 16(3):250-260.
    [abstract]

33. TDT

    Daniel J Schaid (1999), "Case-parents design for gene-environment interaction", Genetic Epidemiology, 16(3):261-273.
    [abstract]

34. 0: DJ Schaid, SJ Jacobsen (1999) "Biased tests of association: comparisons of allele frequencies when departing from Hardy-Weinberg proportions", American Journal of Epidemiology>/a>, 149(8):706-711.

35. population-structure

    SK Service, DW Lang, NB Freimer, LA Sandkuijl (1999), "Linkage-disequilibrium mapping of disease genes by reconstruction of ancestral haplotypes in founder populations", American Journal of Human Genetics , 64:1728-1738.
    [PDF]

36. quantitative-trait

    population-structure

    M Slatkin (1999), "Disequilibrium mapping of a quantitative-trait locus in an expanding population", American Journal of Human Genetics , 64:1764-1772.
    [PDF]

37. TDT

    F Sun, WD Flanders, Q Yang, MJ Khoury (1999), "A new method for estimating the risk ratio in studies using case-parental control design", American Journal of Epidemiology, 148:902-909.

38. TDT

    RS Spielman, WJ Ewens (1999), "TDT clarification (letters to the editor)", American Journal of Human Genetics , 64:668-669.
    [PDF]

39. TDT

    Jun Teng, Neil Risch (1999), "The relative power of family-based and case-control designs for linkage disequilibrium studies of complex human diseases. II. individual genotyping", Genome Research, 9:234-241.
    [PDF]

40. IP Tu, S Whittermore (1999), "Power of association and linkage tests when the disease alleles are unobserved", American Journal of Human Genetics ,64:641-649.
    [PDF]

41. TDT

    ID Waldman, BF Robinson, DC Rowe (1999), "A logistic regression based extension of the TDT for continuous and categorical traits", Annals of Human Genetics, 63:329-340.

42. TDT

    CR Weinberg (1999), "Allowing for missing parents in genetic studies of case-parent triads", American Journal of Human Genetics ,64:1186-1193.
    [PDF]

43. TDT

    JC Whittaker, CM Lewis (1999), "Power comparisons of the transmission/disequilibrium test and sib-transmission/disequilibrium-test statistics", American Journal of Human Genetics ,64: 578-580.

44. TDT

    JC Whittaker, DJ Thompson (1999), "Finite-sample properties of family-based association tests", American Journal of Human Genetics , 64:910-916.
    [PDF]

45. AS Whittemore, LM Nelson (1999), "Study design in genetic epidemiology: theoretical and practical considerations", Journal of the National Cancer Institute Monographs, 26:61-69.

46. population-structure

    AF Wright, AD Carothers, M Pirastu (1999), "Population choice in mapping genes for complex diseases", Nature Genetics, 23:397-404.

47. Momiao Xiong, Li Jin (1999), "Comparison of the power and accuracy of biallelic and microsatellite markers in population-based gene-mapping methods", American Journal of Human Genetics ,64:629-640.
    [PDF]

48. population-structure

    Cixuang Zheng, Robert C Elston (1999), "Multipoint linkage disequilibrium mapping with particular reference to the African-American population", Genetic Epidemiology,17:79-101.

49. TDT

    Hongyu Zhao (1999), "The interpretation of the parameters in the transmission/disequilibrium test", American Journal of Human Genetics ,64:326-328.
    [PDF]

50. H Zhao, AJ Pakstis, JR Kidd, KK Kidd (1999), "Assessing linkage disequilibrium in a complex genetic system. I. overall deviation from random association", Annals of Human Genetics, 63:167-179.

51. JH Zhao, PC Sham, D Curtis (1999), "A program for the Monte Carlo evaluation of significance of the extended transmission/disequilibrium test" (Letters to the editor), American Journal of Human Genetics , 64:1484-1485.