Bibliography:
Linkage Disequilibrium Analysis
(2004)
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+ 2004

  1. Walter T Ambrosius, Ethan M Lange, Carl D Langefeld (2004), "Power for genetic association studies with random allele frequencies and genotype distributions", American Journal of Human Genetics, 74(1):40-49. 74(4):683-693.
    [ abstract]

  2. Eric C Anderson, Montgomery Slatkin (2004), "Population-genetic basis of haplotype blocks in the 5q31 region", American Journal of Human Genetics, 74(1):40-49.
    [ abstract]

  3. CE Bearden, VI Reus, NB Freimer (2004), "Why genetic investigation of psychiatric disorders is so difficult", Current Opinion in Genetics & Development, 14(3):280-286.

  4. MA Beaumont, B Rannala (2004), "The Bayesian revolution in genetics", Nature Reviews Genetics, 5:251-261.

  5. Tim Becker, Michael Knapp (2004), "Maximum-likelihood estimation of haplotype frequencies in nuclear families", Genetic Epidemiology, 27(1):21-32.

  6. Tim Becker, Michael Knapp (2004), "A powerful strategy to account for multiple testing in the context of haplotype analysis", American Journal of Human Genetics, 74(4):561-570.
    [ abstract]

  7. L Bernardinelli, C Berzuini, S Seaman, P Holmans (2004), "Bayesian trio models for association in the presence of genotyping errors", Genetic Epidemiology, 26(1):70-80.

  8. C Bonilla, EJ Parra, CL Pfaff, S Dios, JA Marshall, RF Hamman, RE Ferrell, CL Hoggart, PM McKeigue, MD Shriver (2004), "Admixture in the Hispanics of the San Luis Valley, Colorado, and its implications for complex trait gene mapping", Annals of Human Genetics, 68(2):139-153.
    [abstract]

  9. Catherine Bourgain, Mark Abney, Daniel Schneider, Carole Ober, Mary Sara McPeek (2004), "Testing for Hardy-Weinberg equilibrium in samples with related individuals", Genetics, 168:2349-2361.

  10. Ulrich Broeckel, Nicholas J Schork (2004), "Identifying genes and genetic variation underlying human diseases and complex phenotypes via recombination mapping", Journal of Physiology, 554(1):40-45.
    [abstract]

  11. K Burkett, B McNeney, J Graham (2004), "A note on inference of trait associations with SNP haplotypes and other attributes in generalized linear models", Human Heredity, 57:200-206.

  12. CS Carlson, MA Eberle, L Kruglyak, DA Nickerson (2004), "Mapping complex disease loci in whole-genome association studies", Nature, 429(6990):446-452.

  13. Christopher S Carlson, Michael A Eberle, Mark J Rieder, Qian Yi, Leonid Kruglyak, and Deborah A. Nickerson (2004), "Selecting a maximally informative set of single-nucleotide polymorphisms for association analyses using linkage disequilibrium", American Journal of Human Genetics, 74(1):106-120.
    [ abstract]

  14. M Carrington, M Cullen (2004), "Justified chauvinism: advances in defining meiotic recombination through sperm typing", Trends in Genetics, 20(4):196-205.

  15. AG Clark (2004), "The role of haplotypes in candidate gene studies", Genetic Epidemiology, 27:321-333.
    [abstract]

  16. David Clayton, Juliet Chapman, Jason Cooper (2004), "Use of unphased multilocus genotype data in indirect association studies", Genet Epidemiology, 27:415-428.
    [abstract]

  17. Robert J. Clifford, Michael N. Edmonson, Cu Nguyen, Kenneth H. Buetow (2004), "Large-scale analysis of non-synonymous coding region single nucleotide polymorphisms", Bioinformatics, 20:1006-1014.
    [abstract]

  18. Robert J. Clifford, Michael N. Edmonson, Cu Nguyen, Titia Scherpbier, Ying Hu, Kenneth H. Buetow (2004), "Bioinformatics tools for single nucleotide polymorphism discovery and analysis", Annals of New York Academy of Science, 1020:101-109.
    [ abstract]

  19. David V Conti, W James Gauderman (2004), "SNPs, haplotypes, and model selection in a candidate gene region: The SIMPle analysis for multilocus data ", Genet Epidemiology, 27:429-441.
    [abstract]

  20. Jukka Corander, Patrik Waldmann , Pekka Marttinen and Mikko J. Sillanpaa (2004), "BAPS 2: enhanced possibilities for the analysis of genetic population structure", Bioinformatics, 20(15):2363-2369.

  21. Heather J Cordell (2004), "Properties of case/pseudocontrol analysis for genetic association studies: effects of recombination, ascertainment, and multiple affected offspring", Genetic Epidemiology, 26(3):186-205.

  22. Heather J Cordell, Bryan J Barratt, David G Clayton (2004), "Case/pseudocontrol analysis in genetic association studies: a unified framework for detection of genotype and haplotype associations, gene-gene and gene-environment interactions, and parent-of-origin effects", Genetic Epidemiology, 26(3):167-185.

  23. Dana C Crawford, Christopher S Carlson, Mark J Rieder, Dana P Carrington, Qian Yi, Joshua D Smith, Michael A Eberle, Leonid Kruglyak, Deborah A Nickerson (2004), "Haplotype diversity across 100 candidate genes for inflammation, lipid metabolism, and blood pressure regulation in two population", American Journal of Human Genetics, 74(4):610-622.
    [ abstract]

  24. Wendy Czika, BS Weir (2004), "Properties of the multiallelic trend test", Biometrics, 60(1):69-74.
    [abstract]

  25. quantitative-trait
    Robert Culverhouse, Tsvika Klein, William Shannon (2004), "Detecting epistatic interactions contributing to quantitative traits", Genet Epidemiology, 27(2):141-152.
    [abstract]

  26. PIW De Bakker, R Saxena, RR Graham (2004), "Variation in the human genome and risk to common disease", Pharmacogenomics, 5:157-161.

  27. Eric De Silva, Lawrence A. Kelley, Michael P.H. Stumpf (2004), "The extent and importance of intragenic recombination", Human Genomics, 1(6):410-420.

  28. B Devlin, SA Bacanu, K Roeder (2004), "Genomic control to the extreme", Nature Genetics, 36(11):1129-1130.

  29. K Downes, BJ Barratt, P Akan, SJ Bumpstead, SD Taylor, DG Clayton, P Deloukas (2004), "SNP allele frequency estimation in DNA pools and variance components analysis", Biotechniques, 36(5):840-845.

  30. Frank Dudbridge and Bobby P. C. Koeleman (2004), "Efficient computation of significance levels for multiple associations in large studies of correlated data, including genomewide association studies", American Journal of Human Genetics, 75(3):424-435.
    [abstract]

  31. Caroline Durrant, Krina T. Zondervan, Lon R. Cardon, Sarah Hunt, Panos Deloukas, Andrew P. Morris (2004), "Linkage disequilibrium mapping via cladistic analysis of single-nucleotide polymorphism haplotypes", American Journal of Human Genetics, 75(1):35-43.
    [abstract]

  32. Volodymyr Dvornyk, Ji-Rong Long, Dong-Hai Xiong, Peng-Yuan Liu, Lan-Juan Zhao, Hui Shen, Yuan-Yuan Zhang, Yong-Jun Liu, Sonia Rocha-Sanchez, Peng Xiao, Robert R Reckerand Hong-Wen Deng (2004), "Current limitations of SNP data from the public domain for studies of complex disorders: a test for ten candidate genes for obesity and osteoporosis", BMC Genetics, 5:4.

  33. Steven D Edland, Susan Slager, Matthew Farrer (2004), "Genetic association studies in Alzheimer's disease research: challenges and opportunities", Statistics in Medicine, 23(2):169-178.
    [abstract]

  34. Christopher A Edmonds, Anita S Lillie, L Luca Cavalli-Sforza (2004), "Mutations arising in the wave front of an expanding population", Proceedings of National Academy of Sciences , 101(4):975-979.

  35. Nadia El-Mabrouk and Damian Labuda (2004), "Haplotypes histories as pathways of recombinations", Bioinformatics, 20:1836-1841.
    [abstract]

  36. A Eriksson, B Mehlig (2004), "Gene-history correlation and population structure", Physical Biology, 1:220-228.
    [ abstract]

  37. L Eronen, F Geerts, H Toivonen (2004), "A markov chain approach to reconstruction of long haplotypes", Pacific Symposium on Biocomputing, 9:104-115.

  38. DM Evans, LR Cardon, AP Morris (2004), "Genotype prediction using a dense map of SNPs", Genet Epidemiology, 27:375-384
    [abstract]

  39. WJ Ewens, RS Spielman (2004), "The TDT is a statistically valid test: comments on Wittkowski and Liu", Human Heredity, 58(1):59-60.

  40. P Fearnhead, RM Harding, JA Schneider, S Myers, P Donnelly (2004), "Application of coalescent methods to reveal fine-scale rate variation and recombination hotspots", Genetics, 167(4):2067-2081.

  41. Tasha E Fingerlin, Michael Boehnke, Goncalo R. Abecasis (2004), "Increasing the power and efficiency of disease-marker case-control association studies through use of allele-sharing information", American Journal of Human Genetics, 74(3):432-443.
    [abstract] [PDF]

  42. Morris W. Foster, Richard R. Sharp (2004), "Beyond race: towards a whole-genome perspective on human populations and genetic variation", Nature Reviews Genetics, 5:790-796.
    [abstract]

  43. David Fredman, Stefan J White, Susanna Potter, Evan E Eichler, Johan T Den Dunnen, Anthony J Brookes (2004), "Complex SNP-related sequence variation in segmental genome duplications", Nature Genetics, 36:861-866.
    [abstract]

  44. ML Freedman, D Reich, KL Penney, GJ McDonald, AA Mignault, N Patterson, SB Gabriel, EJ Topol, JW Smoller, CN Pato, MT Pato, TL Petryshen, LN Kolonel, ES Lander, P Sklar, B Henderson, JN Hirschhorn, D Altshuler (2004), "Assessing the impact of population stratification on genetic association studies", Nature Genetics, 36(4):388-393.

  45. N Freimer, C Sabatti (2004), "The use of pedigree, sib-pair and association studies of common diseases for genetic mapping and epidemiology", Nature Genetics, 36(10):1045-1051.

  46. Anna Gonzalez-Neira, Francesc Calafell, Arcadi Navarro, Oscar Lao, Howard Cann, David Comas, Jaume Bertranpetit (2004), "Geographic stratification of linkage disequilibrium: A worldwide population study in a region of chromosome 22", Human Genomics, 1(6):399-409.

  47. TDT
    Saurabh Ghosh, Theodore Reich (2004), "The sib TDT adjusted for age Of disease onset", Annals of Human Genetics, 68(3):249-256.
    [abstract]

  48. DB Goldstein, JN Hirschhorn (2004), "In genetic control of disease, does 'race' matter?" (comment) Nature Genetics, 36(12):1243-1244.

  49. A Gonzalez-Neira, F Calafell, A Navarro, O Lao, H Cann, D Comas, J Bertranpetit (2004), "Geographic stratification of linkage disequilibrium: a worldwide population study in a region of chromosome 22", Human Genomics, 1(6):399-409.

  50. Pierre-Antoine Gourraud, Emmanuelle Genin, Anne Camdon-Thomsen (2004), "Handling missing values in population data: consequences for maximum likelihood estimation of haplotype frequencies", European Journal of Human Genetics, 12:805-812.
    [PDF]

  51. G Greenspan and D. Geiger (2004), "High density linkage disequilibrium mapping using models of haplotype block variation", Bioinformatics, 20:i137-i144.

  52. Gideon Greenspan, Dan Geiger (2004), "Model-based inference of haplotype block variation", Journal of Computational Biology, 11(2-3):493-504.
    [ abstract]

  53. Tiffany A Greenwood, Brinda K Rana, Nicholas J Schork (2004), "Human haplotype block sizes are negatively correlated with recombination rates", Genome Research, 14(7):1358-1361.

  54. Bjarni V Halldórsson, Vineet Bafna, Ross Lippert, Russell Schwartz, Francisco M De La Vega, Andrew G Clark, Sorin Istrail (2004), "Optimal haplotype block-free selection of tagging SNPs for genome-wide association studies", Genome Research, 14:1633-1640.

  55. BV Halldorsson, S Istrail, FM de la Vega (2004), "Optimal selection of SNP markers for disease association studies", Human Heredity, 58:190-202.
    [abstract]

  56. Eran Halperin, Eleazar Eskin (2004), "Haplotype reconstruction from genotype data using imperfect phylogeny", Bioinformatics, 20:1842-1849.
    [abstract]

  57. DC Hamilton, DEC Cole (2004), "Standardizing a composite measure of linkage disequilibrium", Annals of Human Genetics, 68(3):234-239.
    [abstract]

  58. K Hao, X Wang (2004), "Incorporating individual error rate into association test of unmatched case-control design", Human Heredity, 58:154-163.
    [abstract]

  59. Ke Hao, Xin Xu, Nan Laird, Xiaobin Wang, Xiping Xu (2004), "Power estimation of multiple SNP association test of case-control study and application", Genetic Epidemiology, 26(1):22-30.

  60. GA Heiman, SE Hodge, P Gorroochurn, J Zhang, DA Greenberg (2004), "Effect of population stratification on case-control association studies. I. Elevation in false positive rates and comparison to confounding risk ratios (a simulation study)", Human Heredity, 58(1):30-39.

  61. David A Hinds, Renee P Stokowski, Nila Patil, Karel Konvicka, David Kershenobich, David R Cox, Dennis G Ballinger (2004), "Matching strategies for genetic association studies in structured populations", American Journal of Human Genetics, 74(2):317-325.
    [ abstract]

  62. CJ Hoggart, MD Shriver, RA Kittles, DG Clayton, PM McKeigue (2004), "Design and analysis of admixture mapping studies", American Journal of Human Genetics, 74(5):965-978.

  63. Benjamin D Horne, Nicola J Camp (2004), "Principal component analysis for selection of optimal SNP-sets that capture intragenic genetic variation", Genetic Epidemiology, 26(1):11-21.

  64. L Hosking, S Lumsden, K Lewis, A Yeo, L McCarthy, A Bansal, J Riley, I Purvis, CF Xu (2004), "Detection of genotyping errors by Hardy-Weinberg equilibrium testing", European Journal of Human Genetics, 12(5):395-399

  65. X Hu, SJ Schrodi, DA Ross, M Cargill (2004), "Selecting representative SNPs for association studies using power calculations from genotype data", Human Heredity, 57(3):156-170.

  66. JP Ioannidis, EE Ntzani, TA Trikalinos (2004), "'Racial' differences in genetic effects for complex diseases", Nature Genetics, 36(12):1312-1318.

  67. Lynn B Jorde, Stephen P Wooding (2004), "Genetic variation, classification and 'race'", Nature Genetics, 36(supp 11):S28-S33.

  68. Myriam Khlat, Marie-Helene Cazes, Emmanuelle Genin, Marguerite Guiguet (2004), "Robustness of case-control studies of genetic factors to population stratification: magnitude of bias and type I error", Cancer Epidemiology Biomarkers & Prevention, 13:1660-1664.
    [abstract]

  69. Josephine Hoh and Jurg Ott (2004), "Genetic dissection of diseases: design and methods", Current Opinion in Genetics & Development, 14(3):227-323.

  70. TDT
    Steve Horvath, Xin Xu, Stephen L. Lake, Edwin K. Silverman, Scott T. Weiss, Nan M. Laird (2004), "Family-based tests for associating haplotypes with general phenotype data: Application to asthma genetics", Genetic Epidemiology, 26(1):61-69.

  71. Tom WJ Huizinga, David S Pisetsky, Robert P Kimberly (2004), "Associations, populations, and the truth: Recommendations for genetic association studies in Arthritis & Rheumatism", Arthritis & Rheumatism, 50(7):2066-2071.
    [abstract] [PDF]

  72. TDT
    Mark M Iles, Chris Cannings (2004), "Sequential genotyping within TDT families", Mathematical Medicine and Biology: A Journal of the IMA, 21(2):115-127.

  73. AS Jannot, L Essioux, F Clerget-Darpoux (2004), "Association in multifactorial traits: how to deal with rare observations?" Human Heredity, 58:73-81.
    [abstract]

  74. A Jawaid, PC Sham, AJ Makoff, PJ Asherson (2004), "Is haplotype tagging the panacea to association mapping studies?" (letter), European Journal of Human Genetics, 12(4):259-262.

  75. AJ Jeffreys, CA May (2004), "Intense and highly localized gene conversion activity in human meiotic crossover hot spots", Nature Genetics, 36(2):151-156.

  76. Hosung Kang, Zhaohui S. Qin, Tianhua Niu, Jun S. Liu (2004), "Incorporating genotyping uncertainty in haplotype inference for single-nucleotide polymorphisms", American Journal of Human Genetics, 74(3):495-510.
    [abstract]

  77. SJ Kang, SJ Finch, C Haynes, D Gordon (2004), "Quantifying the percent increase in minimum sample size for SNP genotyping errors in genetic model-based association studies", Human Heredity, 58:139-144.
    [abstract]

  78. SJ Kang, D Gordon, AM Brown, J Ott, SJ Finch (2004), Tradeoff between no-call reduction in genotyping error rate loss of sample size for genetic case/control association studies Pacific Symposium on Biocomputing, 9:116-127.

  79. Sun Jung Kang, Derek Gordon, Stephen J. Finch (2004), "What SNP genotyping errors are most costly for genetic association studies?", Genetic Epidemiology, 26(2):132-141.

  80. X Ke, C Durrant, AP Morris, S Hunt, DR Bentley, P Deloukas, LR Cardon (2004), "Efficiency and consistency of haplotype tagging of dense SNP maps in multiple samples", Human Molecular Genetics, 13:2557-2565.

  81. RJ Hung, P Brennan, C Malaveille, S Porru, F Donato, P Boffetta, JS Witte (2004), "Using hierarchical modeling in genetic association studies with multiple markers: application to a case-control study of bladder cancer", Cancer Epidemiology Biomarkers & Prevention, 13(6):1013-1021.

  82. Andrea M. Johnson (2004), Estimation and Sampling Properties of Gene Diversity, Heterozygosity and FST. Ph.D Thesis, Department of Genetics, North Carolina State University.
    [PDF]

  83. X Ke, S Hunt, W Tapper, R Lawrence, G Stavrides, J Ghori, P Whittaker, A Collins, AP Morris, D Bentley, LR Cardon, P Deloukas (2004), "The impact of SNP density on fine-scale patterns of linkage disequilibrium", Human Molecular Genetics, 13(6):577-588.
    [abstract] [PDF]

  84. SK Kim, K Zhang, F Sun (2004), A comparison of different strategies for computing confidence intervals of the linkage disequilibrium measure Pacific Symposium on Biocomputing, 9:128-139.

  85. Gad Kimmel, Ron Shamir (2004), "Maximum likelihood resolution of multi-block genotypes", Proceedings of the Eighth International Conference on Research in Computational Molecular Biology , pp.?-?

  86. Michael Knapp and Tim Becker (2004), "Impact of genotyping errors on type I error rate of the haplotype-sharing transmission/disequilibrium test (HS-TDT)" (letters to the editor), American Journal of Human Genetics, 74(3):589-591.

  87. Jo Knight (2004), "A survey of current software for genetic power calculations", Human Genomics, 1(3):225-227.

  88. Inke R Konig, Andreas Ziegler (2004), "Analysis of SNPs in pooled DNA: A decision theoretic model", Genetic Epidemiology, 26(1):31-43.

  89. Peter Kraft, Duncan C Thomas (2004), "Case-sibling gene-association studies for diseases with variable age at onset", Statistics in Medicine, 23(23):3697-3712.
    [abstract]

  90. TDT
    Christoph Lange, Deborah Blacker, Nan M Laird (2004), "Family-based association tests for survival and times-to-onset analysis", Statistics in Medicine, 23(2):179-189.
    [abstract]

  91. TDT
    Christoph Lange, Dawn DeMeo, Edwin K Silverman, Scott T Weiss, Nan M. Laird (2004), "PBAT: Tools for family-based association studies", American Journal of Human Genetics, 74(2):367-369.

  92. Soohyun Lee and Changwon Kang (2004), "CHOISS for selection of single nucleotide polymorphism markers on interval regularity", Bioinformatics, 20(4):581-582.
    [abstract]

  93. Wen-Chung Lee (2004), "Case-control association studies with matching and genomic controlling", Genetic Epidemiology, 27(1):1-13.

  94. Jing Li, Tao Jiang (2004), "An exact solution for finding minimum recombinant haplotype configurations on pedigrees with missing data by integer linear programming", Proceedings of the Eighth International Conference on Research in Computational Molecular Biology , pp.?-?

  95. Lei M Li, Jong Hyun Kim, Michael S Waterman (2004), "Haplotype reconstruction from SNP alignment", Journal of Computational Biology, 11(2-3):505-516.

  96. W Li, PK Gregersen (2004), "Reconstructing haplotypes in pedigrees: the importance of parental information", American Journal of Medical Genetics, 124A:107-109.
    [PDF]

  97. DY Lin (2004), "Haplotype-based association analysis in cohort studies of unrelated individuals", Genetic Epidemiology, 26(4):255-264.

  98. Ming Lin, Lee-Jen Wei, William R. Sellers, Marshall Lieberfarb, Wing Hung Wong, Cheng Li (2004), "dChipSNP: significance curve and clustering of SNP-array-based loss-of-heterozygosity data", Bioinformatics, 20:1233-1240.
    [abstract]

  99. Shin Lin, Aravinda Chakravarti, David J Cutler (2004), "Haplotype and missing data inference in nuclear families", Genome Research, 14:1624-1632.

  100. Zhen Lin and Russ B. Altman (2004), "Finding haplotype tagging SNPs by use of principal components analysis", American Journal of Human Genetics, 75(5):850-861.

  101. Nianjun Liu, Sarah L. Sawyer, Namita Mukherjee, Andrew J. Pakstis, Judith R. Kidd, Kenneth K. Kidd, Anthony J. Brookes, Hongyu Zhao (2004), "Haplotype block structures show significant variation among populations", Genet Epidemiology, 27:385-400
    [abstract]

  102. CE Lowe, JD Cooper, JM Chapman, BJ Barratt, RC Twells, EA Green, DA Savage, C Guja, C Ionescu-Tirgoviste, E Tuomilehto-Wolf, J Tuomilehto, JA Todd, DG Clayton (2004), "Cost-effective analysis of candidate genes using htSNPs: a staged approach", Genes and Immunity, 5(4):301-305.

  103. KL Lunetta, LB Hayward, J Segal, PV Eerdewegh (2004), "Screening large-scale association study data: exploiting interactions using random forests", BMC Genetics, 5:32.

  104. Audrey Lynn, Terry Ashley, Terry Hassold (2004), "Variation in human meiosis recombination", Annual Review of Genomics and Human Genetics, 5:317-349.
    [PDF]

  105. Nikolas Maniatis, Andrew Collins, Jane Gibson, Weihua Zhang, William Tapper, Newton E. Morton (2004), "Positional cloning by linkage disequilibrium", American Journal of Human Genetics,74(5):846-855.
    [abstract]

  106. S Mano, N. Yasuda, T. Katoh, K. Tounai, H. Inoko, T. Imanishi, G. Tamiya, T. Gojobori (2004), "Notes on the maximum likelihood estimation of haplotype frequencies", Annals of Human Genetics, 68(3):257-264.
    [abstract] [PDF]

  107. J Marchini, LR Cardon, MS Phillips, P Donnelly (2004), "The effects of human population structure on large genetic association studies", Nature Genetics, 36(5):512-517.
    [PDF]

  108. population-structure
    GT Marth, E Czabarka, J Murvai, ST Sherry (2004), "The allele frequency spectrum in genome-wide human variation data reveals signals of differential demographic history in three large world populations", Genetics, 166(1):351-372.
    [abstract]

  109. MS McPeek, X Wu, C Ober (2004), "Best linear unbiased allele-frequency estimation in complex pedigrees", Biometrics, 60(2):359-367.

  110. GAT McVean, SR Myers, S Hunt, P Deloukas, DR Bentley, P Donnelly (2004), "The fine-scale structure of recombination rate variation in the human genome", Science, 304(5670):581-584.
    [PDF]

  111. Adele A. Mitchell, Michael E. Zwick, Aravinda Chakravarti, and David J. Cutler (2004), "Discrepancies in dbSNP confirmation rates and allele frequency distributions from varying genotyping error rates and patterns", Bioinformatics, 20:1022-1032
    [abstract]

  112. John Molitor, Paul Marjoram, David Conti, Duncan Thomas (2004), "A survey of current Bayesian gene mapping methods", Human Genomics, 1(4):371-374.

  113. Giovanni Montana, Jonathan K Pritchard (2004), "Statistical tests for admixture mapping with case-control and cases-only data", American Journal of Human Genetics,75(5):771-789. abstract]

  114. Joanna L Mountain, Neil Risch (2004), "Assessing genetic contributions to phenotypic differences among 'racial' and 'ethnic' groups", Nature Genetics, 36(supp 11):S48-S53.

  115. AP Morris, JC Whittaker, DJ Balding (2004), "Little Loss of Information Due to Unknown Phase for Fine-Scale Linkage-Disequilibrium Mapping with Single-Nucleotide-Polymorphism Genotype Data", American Journal of Human Genetics,74(5):945-953.
    [abstract]

  116. Richard W Morris, Norman L Kaplan (2004), "Testing for association with a case-parents design in the presence of genotyping errors", Genetic Epidemiology, 26(2):142-154.

  117. Jakob C Mueller (2004), "Linkage disequilibrium for different scales and applications", Briefings in Bioinformatics, 5(4):355-364.
    [PDF]

  118. Jakob C Mueller, Christophe Andreoli (2004), "Plotting haplotype-specific linkage disequilibrium patterns by extended haplotype homozygosity", Bioinformatics, 20(5):786-787.
    [abstract]

  119. Connie J. Mulligan, Keith Hunley, Suzanne Cole, Jeffrey C. Long (2004), "Population genetics, history, and health patterns in native americans", Annual Review of Genomics and Human Genetics, 5:295-315.
    [abstract]

  120. MR Munafo, TG Clark, J Flint (2004), "Assessing publication bias in genetic association studies: evidence from a recent meta-analysis", Psychiatry Research, 129(1):39-44.

  121. Marcus R Munafo, Jonathan Flint (2004), "Meta-analysis of genetic association studies", Trends in Genetics, 20(9):439-444.
    [abstract]

  122. Nico J D Nagelkerke, Barbara Hoebee, Peter Teunis, Tjeerd G Kimman (2004), "Combining the transmission disequilibrium test and case-control methodology using generalized logistic regression", European Journal of Human Genetics, 12(11):964-970.

  123. Benjamin M. Neale and PC Sham (2004), "The future of association studies: gene-based analysis and replication", American Journal of Human Genetics, 75(3):353-362.
    [abstract]

  124. Matthew R Nelson, George Marnellos, Stefan Kammerer, Carolyn R Hoyal, Michael M Shi, Charles R Cantor, Andreas Braun (2004), "Large-scale validation of single nucleotide polymorphisms in gene regions", Genome Research, 14:1664-1668.

  125. Tu H. Nguyen, Chunyu Liu, Elliot S. Gershon, and Francis J. McMahon (2004), "Frequency Finder: a multi-source web application for collection of public allele frequencies of SNP markers", Bioinformatics, 20(3):439-443.

  126. DM Nielsen, MG Ehm, DV Zaykin, BS Weir (2004), "Effect of two- and three-locus linkage disequilibrium on the power to detect marker/phenotype associations", Genetics, 168(2):1029-1040.

  127. R Nielsen, MJ Hubisz, AG Clark (2004), "Reconstituting the frequency spectrum of ascertained SNP data", Genetics, 168:2373-2382.

  128. Tianhua Niu (2004), "Algorithms for inferring haplotypes", Genetic Epidemiology, 27:334-347.
    [abstract]

  129. BV North, D Curtis, ER Martin, EH Lai, AD Roses, PC Sham (2004), "Further investigation of linkage disequilibrium SNPs and their ability to identify associated susceptibility loci", Annals of Human Genetics, 68(3):240-248.
    [abstract]

  130. Dale R Nyholt (2004), "A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other", American Journal of Human Genetics, 74(4):765-769.

  131. J Ott (2004), "Issues in association analysis: error control in case-control association studies for disease gene discovery", Human Heredity, 58:171-174.
    [abstract]

  132. Franco Pagani, Francisco E. Baralle (2004), "Genomic variants in exons and introns: identifying the splicing spoilers", Nature Reviews Genetics, 5:389-396.
    [abstract]

  133. T Pastinen, TJ Hudson (2004), "Cis-acting regulatory variation in the human genome", Science, 306(5696):647-650.

  134. N Patterson, N Hattangadi, B Lane, KE Lohmueller, DA Hafler, JR Oksenberg, SL Hauser, MW Smith, SJ O'Brien, D Altshuler, MJ Daly, D Reich (2004), "Methods for high-density admixture mapping of disease genes", American Journal of Human Genetics, 74(5):979-1000.

  135. Fredrik Pettersson, Oskar Jonsson, and Lon R. Cardon (2004), "GOLDsurfer: three dimensional display of linkage disequilibrium", Bioinformatics, 20:3241-3243.
    [abstract]

  136. S Purcell, PC Sham (2004), "Properties of structured association approaches to detecting population stratification", Human Heredity, 58(2):93-107.
    [abstract]

  137. Dajun Qian (2004), "Haplotype sharing correlation analysis using family data: A comparison with family-based association test in the presence of allelic heterogeneity", Genetic Epidemiology, 27(1):43-52.

  138. TR Rebbeck, CB Ambrosone, DA Bell, SJ Chanock, RB Hayes, FF Kadlubar, DC Thomas (2004), "SNPs, haplotypes, and cancer: applications in molecular epidemiology", Cancer Epidemiology Biomarkers & Prevention, 13(5):681-687.

  139. TR Rebbeck, ME Martinez, TA Sellers, PG Shields, CP Wild, JD Potter (2004), "Genetic variation and cancer: improving the environment for publication of association studies", Cancer Epidemiology Biomarkers & Prevention, 13:1985-1986.

  140. TR Rebbeck, M Spitz, X Wu (2004), "Assessing the function of genetic variants in candidate gene association studies", Nature Reviews Genetics, 5:589-597.
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