Bibliography:
Linkage Disequilibrium Analysis
(2006)
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+ 2006

  1. María M. Abad-Grau, Rosana Montes, and Paola Sebastiani (2006), "Building chromosome-wide LD maps", Bioinformatics, 22(16):1933-1934
    [abstract]

  2. Andrew S. Allen, Eden R. Martin, Xuejun Qin, Yi-Ju Li (2006), "Genetic association tests based on ranks (GATOR) for quantitative traits with and without censoring", Genetic Epidemiology, 30(3):248-258.

  3. TDT
    MF Baksh, DJ Balding, TJ Vyse, JC Whittaker (2006), "A likelihood ratio approach to family-based association studies with covariates", Annals of Human Genetics, 70(1):131-139.

  4. David J Balding (2006), "A tutorial on statistical methods for population association studies", Nature Reviews Genetics, 7(10):781-791.
    [abstract]

  5. Claire Bardel, Vincent Danjean, and Emmanuelle Génin (2006), "ALTree: association detection and localization of susceptibility sites using haplotype phylogenetic trees", Bioinformatics, 22(11):1402-1403.
    [abstract]

  6. Michael R. Barnes (2006), "Navigating the HapMap", Briefings in Bioinformatics, 7:211-224.
    [abstract]

  7. JC Barrett, LR Cardon (2006), "Evaluating coverage of genome-wide association studies", Nature Genetics, 38(6):659-662.

  8. Toralf Bernig, Stephen J Chanock (2006), "Challenges of SNP genotyping and genetic variation: its future role in diagnosis and treatment of cancer", Expert Review of Molecular Diagnostics, 6(3):319-331.

  9. Kavitha Bhasi, Li Zhang, Daniel Brazeau, Aidong Zhang, and Murali Ramanathan (2006), "VizStruct for visualization of genome-wide SNP analyses", Bioinformatics, 22(13):1569-1576.
    [abstract]

  10. Stefanie Biedermann, Eva Nagel, Axel Munk, Hajo Holzmann, Ansgar Steland (2006), "Tests in a case-control design including relatives", Scandinavian Journal of Statistics, 33(4):621-635.
    [abstract]

  11. JM Biernacka, HJ Cordell (2006), "Perils and pitfalls of permutation tests for distinguishing the effects of neighbouring polymorphisms", Genetic Epidemiology, 30(7):582-592.

  12. PE Bonnen, I Pe'er, RM Plenge, J Salit, JK Lowe, MH Shapero, RP Lifton, JL Breslow, MJ Daly, DE Reich, KW Jones, M Stoffel, D Altshuler, JM Friedman (2006), "Evaluating potential for whole-genome studies in Kosrae, an isolated population in Micronesia", Nature Genetics, 38(2):214-217.

  13. Dumitru Brinza and Alexander Zelikovsky (2006), "2SNP: scalable phasing based on 2-SNP haplotypes", Bioinformatics, 22(3):371-373.
    [abstract]

  14. DG Brown, IM Harrower (2006), "Integer programming approaches to haplotype inference by pure parsimony", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3(2):141-154.

  15. W Burke, MJ Khoury, A Stewart, RL Zimmern, Bellagio Group. (2006), "The path from genome-based research to population health: development of an international public health genomics network", Genet Med., 8(7):451-458.

  16. E. Capriotti, R. Calabrese, and R. Casadio (2006), "Predicting the insurgence of human genetic diseases associated to single point protein mutations with support vector machines and evolutionary information", Bioinformatics, 22(22):2729-2734.
    [abstract]

  17. Victoria EH Carlton, James S Ireland, Francisco Useche, Malek Faham (2006), "Functional single nucleotide polymorphism-based association studies", Human Genomics, 2(6):391-402.

  18. KW Carter, PA McCaskie, LJ Palmer (2006), "JLIN: A java based linkage disequilibrium plotter", BMC Bioinformatics, 7(1):60.
    [abstract]

  19. Natalie Castellana, Kedar Dhamdhere, Srinath Sridhar, Russell Schwartz (2006), "Relaxing haplotype block models for association testing" Pacific Symposium on Biocomputing, 11:454-466.

  20. Chia-Jung Chang, Yao-Ting Huang, and Kun-Mao Chao (2006), "A greedier approach for finding tag SNPs", Bioinformatics, 22(6):685-691.
    [abstract]

  21. Nilanjan Chatterjee, Zeynep Kalaylioglu, Roxana Moslehi, Ulrike Peters, Sholom Wacholder (2006), "Powerful multilocus tests of genetic association in the presence of gene-gene and gene-environment interactions", American Journal of Human Genetics, 79(6):1002-1016.
    [abstract]

  22. Nilanjan Chatterjee, Zeynep Kalaylioglu, Joanna H. Shih, Mitchell H. Gail (2006), "Case-control and case-only designs with genotype and family history data: estimating relative risk, residual familial aggregation, and cumulative risk", Biometrics, 62(1):36-48.
    [abstract]

  23. Jinbo Chen, Nilanjan Chatterjee (2006), "Haplotype-based association analysis in cohort and nested case-Control studies", Biometrics, 62(1):28-35.
    [abstract]

  24. DF Conrad, TD Andrews, NP Carter, ME Hurles, JF Pritchard (2006), "A high-resoluation survey of deletion polymorphism in the human genome", Nature Genetics, 38:75-81.

  25. Donald F Conrad, Mattias Jakobsson, Graham Coop, Xiaoquan Wen, Jeffrey D Wall, Noah A Rosenberg, Jonathan K Pritchard (2006) "A worldwide survey of haplotype variation and linkage disequilibrium in the human genome", Nature Genetics, 38:1251-1260.
    [PDF]

  26. HJ Cordell (2006), "Estimation and testing of genotype and haplotype effects in case-control studies: comparison of weighted regression and multiple imputation procedures", Genetic Epidemiology, 30(3):259-275.

  27. Dana C. Crawford, Qian Yi, Joshua D. Smith, Cynthia Shephard, Michelle Wong, Laura Witrak, Robert J. Livingston, Mark J. Rieder, Deborah A. Nickerson (2006), "Allelic spectrum of the natural variation in CRP", Human Genetics, 119(5):496-504.
    [ abstract]

  28. D Curtis, J Knight, PC Sham (2006), "Program report: GENECOUNTING support programs", Annals of Human Genetics, 70:277-279.

  29. David Curtis, Pak C. Sham (2006), "Estimated haplotype counts from case-control samples cannot be treated as observed counts", American Journal of Human Genetics, 78(4):729-730.

  30. Z Dawy, B Goebel, J Hagenauer, C Andreoli, T Meitinger, JC Mueller (2006), "Gene mapping and marker clustering using Shannon's mutual information", IEEE/ACM Transactions on Computational Biology and Bioinformatics, 3(1):47-56.

  31. PIW De Bakker, NP Burtt, RR Graham, C Guiducci, R Yelensky, JA Drake, T Bersaglieri, KL Penney, J Butler, S Young, RC Onofrio, HN Lyon, DO Stram, CA Haiman, MF Freedman, X Zhu, R Cooper, L Groop, LN Kolonel, BE Henderson, MJ Daly, JN Hirschhorn, D Altshuler (2006), "Transferability of tag SNPs in genetic association studies in multiple populations", Nature Genetics, 38:1298-1303.

  32. Paul IW De Bakker, Robert R Graham, David Altshuler, Brian E. Henderson, Christopher A. Haiman (2006), "Transferability of tag SNPs to capture common genetic variation in DNA repair genes across multiple populations", Pacific Symposium on Biocomputing, 11:478-486.

  33. Francisco M De La Vega, Hadar I. Isaac, Charles R. Scafe (2006), "A tool for selecting SNPs for association studies based on observed linkage disequilibrium patterns", Pacific Symposium on Biocomputing, 11:487-498.

  34. TDT
    Jie Ding, Shili Lin, and Yang Liu (2006), "Monte Carlo pedigree disequilibrium test for markers on the X chromosome", American Journal of Human Genetics, 79(3):567-573.
    [abstract]

  35. Zhihong Ding, Dan Gusfield, Charles Langley, Yun Song, Yufeng Wu (2006), "Algorithms to distinguish the role of gene-conversion from single-crossover recombination in the derivation of SNP sequences in populations", Proceedings of the Tenth International Conference on Research in Computational Molecular Biology , pp.?-?

  36. J Drake, A Bird, C Nemesh, J Thomas, DJ Newton-Cheh, C Reymond, A Excoffier, L Attar, H Antonarakis, SE Dermitzakis, ET Dermitzakis, JN Hirschhorn (2005), "Conserved noncoding sequences are selectively constrained and not mutation cold spots", Nature Genetics, 38:223-227.

  37. Frank Dudbridge (2006), "A note on permutation tests in multistage association scans" (letters to the editor), American Journal of Human Genetics, 78(6):1094-1095.

  38. Frank Dudbridge, Arief Gusnanto, Bobby PC Koeleman (2006), "Detecting multiple associations in genome-wide studies", Human Genomics, 2(5):310-317.

  39. Scott M. Dudek, Alison A. Motsinger, Digna R. Velez, Scott M. Williams, Marylyn D. Ritchie (2006), "Data simulation software for whole-genome association and other studies in human genetics", Pacific Symposium on Biocomputing, 11:499-510.

  40. Michael A. Eberle, Mark J. Rieder, Leonid Kruglyak, Deborah A. Nickerson (2006), "Allele frequency matching between SNPs reveals an excess of linkage disequilibrium in genic regions of the human genome", PLoS Genetics, 2:e142. [html]

  41. Michael P Epstein, Irwin D Waldman, Glen A Satten (2006), "Improved association analyses of disease subtypes in case-parent triads", Genetic Epidemiology, 30(3):209-219.

  42. Evangelos Evangelou, Thomas A. Trikalinos, Georgia Salanti, John P. A. Ioannidis (2006), "Family-based versus unrelated case-control designs for genetic associations", PLoS Genetics, 2(8): e123.

  43. David M. Evans and Lon R. Cardon (2006), "Genome-wide association: a promising start to a long race", Trends in Genetics, 22:350-354.

  44. DM Evans, J Marchini, AP Morris, LR Cardon (2006), "Two-stage two-locus models in genome-wide association", PLoS Genetics, 2(9):e157.

  45. TDT
    DM Evans, AP Morris, LR Cardon, PC Sham (2006), "A note on the power to detect transmission distortion in parent-child trios via the transmission disequilibrium test", Behav. Genetics, 36(6):947-950.

  46. Laurent Excoffier and Gerald Heckel (2006), "Computer programs for population genetics data analysis: a survival guide", Nature Reviews Genetics, 7(10):745-758.
    [abstract]

  47. Jian-Bing Fan, Mark S Chee, Kevin L Gunderson (2006), "Highly parallel genomic assays", Nature Reviews Genetics, 7(8):632-644.
    [abstract]

  48. Paul Fearnhead (2006), "SequenceLDhot: detecting recombination hotspots", Bioinformatics, 22(24):3061-3066.
    [abstract]

  49. Lars Feuk, Andrew R. Carson and Stephen W. Scherer (2006), "Structural variation in the human genome", Nature Reviews Genetics, 7(2):85-97.
    [abstract]

  50. S Fiddy, D Cattermole, D Xie, XY Duan, R Mott (2006), "An integrated system for genetic analysis", BMC Bioinformatics, 7:210.

  51. David Fredman, Sarah L Sawyer, Linda Stromqvist, Salim Mottagui-Tabar, Kenneth K Kidd, Claes Wahlestedt, Stephen J Chanock, Anthony J Brookes (2006), "Nonsynonymous SNPs: validation characteristics, derived allele frequency patterns, and suggestive evidence for natural selection", Human Mutation, 27(2):173-186.

  52. Andrew E Fry, Clare J Trafford, Martin A Kimber, Man-Suen Chan, Kirk A Rockett, Dominic P Kwiatkowski (2006), "Haplotype homozygosity and derived alleles in the human genome", American Journal of Human Genetics, 78(6):1053-1059.
    [abstract]

  53. C Garner (2006), "The use of random controls in genetic association studies", Human Heredity, 61:22-26.
    [abstract]

  54. Tom R Gaunt, Santiago Rodriguez, Carlos Zapata, Ian NM Day (2006), "MIDAS: software for analysis and visualisation of interallelic disequilibrium between multiallelic markers", BMC Bioinformatics, 7:227.
    [abstract]

  55. J Raphael Gibbs, Andrew Singleton (2006), "Application of genome-wide single nucleotide polymorphism typing: simple association and beyond", PLoS Genetics, 2(10):e150.

  56. J Gibson, NE Morton, A Collins (2006), "Extended tracts of homozygosity in outbred human populations", Human Molecular Genetics, 15(5):789-795.

  57. Anna González-Neira, Xiayi Ke, Oscar Lao, Francesc Calafell, Arcadi Navarro, David Comas, Howard Cann, Suzannah Bumpstead, Jilur Ghori, Sarah Hunt, Panos Deloukas, Ian Dunham, Lon R. Cardon, and Jaume Bertranpetit (2006), "The portability of tagSNPs across populations: a worldwide survey", Genome Research, 16(3):323-330.
    [abstract]

  58. Shyam Gopalakrishnan, Zhaohui S. Qin (2006), "TagSNP selection based on pairwise LD criteria and power analysis in association studies", Pacific Symposium on Biocomputing, 11:511-522.

  59. Prakash Gorroochurn, Gary A Heiman, Susan Hodge, David A Greenberg (2006), "Centralizing the non-central chi-square: a new method to correct for population stratification in genetic case-control association studies", Genetic Epidemiology, 30:277-289.

  60. Danielle M. Greenawalt, Xiangfeng Cui, Yujun Wu, Yong Lin, Hui-Yun Wang, Minjie Luo, Irina V. Tereshchenko, Guohong Hu, James Y. Li, Yi Chu, Marco A. Azaro, Christina J. DeCoste, Nyam-Osor Chimge, Richeng Gao, Li Shen, Weichung J. Shih, Kenneth Lange, and Honghua Li (2006), "Strong correlation between meiotic crossovers and haplotype structure in a 2.5-Mb region on the long arm of chromosome 21", Genome Research, 16(2):08-214.
    [abstract]

  61. Mickael Guedj, David Robelin, Mark Hoebeke, Marc Lamarine, Jérôme Wojcik, Gregory Nuel (2006), "Detecting local high-scoring segments: a first-stage approach for genome-wide association studies", Statistical Applications in Genetics and Molecular Biology, 5(1):22.
    [abstract]

  62. DC Hamilton, Q Liu, DEC Cole (2006), "Approximate variance for a standardized composite measure of linkage disequilibrium", Annals of Human Genetics, 70(4):535-540.

  63. Areum Han, Hyo Jin Kang, Yoobok Cho1, Sunghoon Lee, Young Joo Kim and Sungsam Gong (2006), "SNP@Domain: a web resource of single nucleotide polymorphisms (SNPs) within protein domain structures and sequences", Nucleic Acids Research, 34(web server issue):W642-W644.

  64. NA Hanchard, KA Rockett, C Spencer, G Coop, M Pinder, M Jallow, M Kimber, G McVean, R Mott, DP Kwiatkowski (2006), "Screening for recently selected alleles by analysis of human haplotype similarity", American Journal of Human Genetics, 78(1):153-159.

  65. Jingwu He and Alexander Zelikovsky (2006), "MLR-tagging: informative SNP selection for unphased genotypes based on multiple linear regression", Bioinformatics, 22(20):2558-2561.
    [abstract]

  66. G Hellenthal, JK Pritchard, M Stephens (2006), "The effects of genotype-dependent recombination, and transmission asymmetry, on linkage disequilibrium", Genetics, 172:2001-2005.

  67. Bradley M. Hemminger, Billy Saelim, and Patrick F. Sullivan (2006), "TAMAL: an integrated approach to choosing SNPs for genetic studies of human complex traits", Bioinformatics, 22(5):626-627.
    [abstract]

  68. DA Hinds, AP Kloek, M Jen, X Chen, KA Frazer (2006), "Common deletions and SNPs are in linkage disequilibrium in the human genome", Nature Genetics, 38(1):82-85.

  69. P Hintsanen, P Sevon, P Onkamo, L Eronen and H Toivonen (2006), "An empirical comparison of case-control and trio based study designs in high throughput association mapping", Journal of Medical Genetics, 43:617-662

  70. Thomas Hoffmann and Christoph Lange (2006), "P2BAT: a massive parallel implementation of PBAT for genome-wide association studies in R", Bioinformatics, 22(24):3103-3105.
    [abstract]

  71. BN Howie, CS Carlson, MJ Rieder, DA Nickerson (2006), "Efficient selection of tagging single-nucleotide polymorphisms in multiple populations", Human Genetics, 120(1):58-68.

  72. G Hu, H-Y Wang, D M Greenawalt, M A Azaro, M Luo, I V Tereshchenko, X Cui, Q Yang, R Gao, L Shen, and H Li (2006), "AccuTyping: new algorithms for automated analysis of data from high-throughput genotyping with oligonucleotide microarrays", Nucleic Acids Research, 34(17):e116.

  73. Wei Huang, Yungang He, Haifeng Wang, Ying Wang, Yangfan Liu, Yi Wang, Xun Chu, Ying Wang, Liang Xu, Yayun Shen, Xiaoyan Xiong, Hui Li, Bo Wen, Ji Qian, Wentao Yuan, Chenhui Zhang, Yi Wang, Hongquan Jiang, Guoping Zhao, Zhu Chen, and Li Jin (2006), "Linkage disequilibrium sharing and haplotype-tagged SNP portability between populations", Proceedings of National Academy of Sciences, 103(5):1418-1421.

  74. JP Ioannidis (2006), "Journals should publish all "null" results and should sparingly publish 'positive' results" (letter to the editor), Cancer Epidemiology Biomarkers & Prevention, 15(1):186.
    [PDF]

  75. JP Ioannidis, M Gwinn, J Little, JP Higgins, JL Bernstein, P Boffetta, M Bondy, MS Bray, PE Brenchley, PA Buffler, JP Casas, A Chokkalingam, J Danesh, GD Smith, S Dolan, R Duncan, NA Gruis, P Hartge, M Hashibe, DJ Hunter, MR Jarvelin, B Malmer, DM Maraganore, JA Newton-Bishop, TR O'Brien, G Petersen, E Riboli, G Salanti, D Seminara, L Smeeth, E Taioli, N Timpson, AG Uitterlinden, P Vineis, N Wareham, DM Winn, R Zimmern, MJ Khoury, Human Genome Epidemiology Network and the Network of Investigator Networks (2006), "A road map for efficient and reliable human genome epidemiology", Nature Genetics, 38(1):3-5.

  76. JP Ioannidis, TA Trikalinos, MJ Khoury (2006), "Implications of small effect sizes of individual genetic variants on the design and interpretation of genetic association studies of complex diseases", American Journal of Epidemiology, 164(7):609-614.

  77. E Jorgenson, JS Witte (2006), "Coverage and power in genomewide association studies", American Journal of Human Genetics, 78(5):884-888.

  78. E Jorgenson, JS Witte (2006), "A gene-centric approach to genome-wide association studies", Nature Reviews Genetics, 7(11):885-891.
    [abstract]

  79. Imtiaz A Khan, Matthew Mort, Paul R Buckland, Michael C O'Donovan, David N Cooper, Nadia A Chuzhanova (2006), "In Silico discrimination of single nucleotide polymorphisms and pathological mutations in human gene promoter regions by means of local DNA sequence context and regularity", In Silico Biology, 6(1-2):23-34.

  80. MJ Khoury, M Gwinn (2006), "Genomics, epidemiology, and common complex diseases: let's not throw out the baby with the bathwater!", International Journal of Epidemiology, 35(5):1363-1364.

  81. Gad Kimmel and Ron Shamir (2006), "A fast method for computing high-significance disease association in large population-based studies", American Journal of Human Genetics, 79(3):481-492.
    [abstract]

  82. George Kirov, Ivan Nikolov, Lyudmila Georgieva, Valentina Moskvina, Michael J Owen, Michael C O'Donovan (2006), "Pooled DNA genotyping on Affymetrix SNP genotyping arrays", BMC Genomics, 7:27.
    [abstract]

  83. K Köhler, H Bickeböller (2006), "Case-control association tests correcting for population stratification", Annals of Human Genetics, 70:98-115.

  84. Natalay Kouprina and Vladimir Larionov (2006), "TAR cloning: insights into gene function, long-range haplotypes and genome structure and evolution", Nature Reviews Genetics, 7(10):805-812.
    [abstract]

  85. Peter Kraft (2006), "Efficient two-stage genome-wide association designs based on false positive report probabilities", Pacific Symposium on Biocomputing, 11:523-534.

  86. PY Kwok (2006), "Guest Editorial: Genome-wide association studies getting more complicated but help is on the way", Human Genomics, 2(6):341-342.

  87. Nan M. Laird and Christoph Lange (2006), "Family-based designs in the age of large-scale gene-association studies", Nature Reviews Genetics, 7(5):385-394.
    [abstract]

  88. P. Lamy, C. L. Andersen, F. P. Wikman, and C. Wiuf (2006), "Genotyping and annotation of Affymetrix SNP arrays", Nucleic Acids Research, 34(14):e100.

  89. Phil Hyoun Lee and Hagit Shatkay (2006), "BNTagger: improved tagging SNP selection using Bayesian networks", Bioinformatics, 22:e211-e219.
    [abstract]

  90. Oscar Lao, Kate van Duijn, Paula Kersbergen, Peter de Knijff, Manfred Kayser (2006), "Proportioning whole-genome single-nucleotide-polymorphism diversity for the identification of geographic population structure and genetic ancestry", American Journal of Human Genetics, 78(4):680-690.

  91. D Levy, SR DePalma, EJ Benjamin, CJ O'Donnell, H Parise, JN Hirschhorn, RS Vasan, S Izumo, MG Larson (2006), "Phenotype-genotype association grid: a convenient method for summarizing multiple association analyses", BMC Genetics, 7:30.

  92. C Li, M Boehnke (2006), "Haplotype association analysis for late onset diseases using nuclear family data", Genetic Epidemiology, 30(3):220-230.
    [ abstract]

  93. DY Lin (2006), "Evaluating statistical significance in two-stage genomewide association studies", American Journal of Human Genetics, 78(3):505-509.

  94. Hua Liu, Franck Prugnolle, Andrea Manica, and François Balloux (2006), "A geographically explicit genetic model of worldwide human-settlement history", American Journal of Human Genetics, 79(2):230-237.
    [abstract]

  95. N Liu, H Zhao (2006), "A non-parametric approach to population structure inference using multilocus genotypes", Human Genomics, 2(6):353-364.

  96. Tian Liu, Rory J. Todhunter, Qing Lu, Lindsay Schoettinger, Hongying Li, Ramon C. Littell, Nancy Burton-Wurster, Gregory M. Acland, George Lust, and Rongling Wu (2006) "Modeling extent and distribution of zygotic disequilibrium: implications for a multigenerational Canine pedigree", Genetics, 174(1):439-453.

  97. W Liu, W Zhao, GA Chase (2006), "The impact of missing and erroneous genotypes on tagging SNP selection and power of subsequent association tests", Human Heredity, 61:104-110.
    [abstract]

  98. Zhenqiu Liu, Shili Lin, Ming Tan (2006), "Genome-wide tagging SNPs with entropy-based Monte Carlo method", Journal of Computational Biology, 13(9):1606-1614.
    [abstract]

  99. Devin P Locke, Andrew J Sharp, Steven A McCarroll, Sean D McGrath, Tera L Newman, Ze Cheng, Stuart Schwartz, Donna G Albertson, Daniel Pinkel, David M Altshuler, Evan E Eichler (2006), "Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome", American Journal of Human Genetics, 79(2):275-290.
    [abstract]

  100. Kirk E Lohmueller, Matthew M Mauney, David Reich, John M. Braverman1 (2006), "Variants associated with common disease are not unusually differentiated in frequency across populations", American Journal of Human Genetics, 78:130-136.
    [abstract]

  101. XY Lou, JZ Ma, MC Yang, J Zhu, PY Liu, HW Deng, RC Elston, MD Li (2006), "Improvement of mapping accuracy by unifying linkage and association analysis", Genetics, 172(1):647-661.

  102. David J Lunn, John C Whittaker, Nicky Best (2006), "A Bayesian toolkit for genetic association studies", Genetic Epidemiology, 30(3):231-247.

  103. Reedik Magi, Lauris Kaplinski, and Maido Remm (2006), "The whole genome TagSNP selection and transferability among HapMap populations", Pacific Symposium on Biocomputing, 11:535-543.

  104. Thomas Mailund, Mikkel H. Schierup, Christian N. S. Pedersen, Jesper N. Madsen, Jotun Hein, and Leif Schauser (2006), "GeneRecon?a coalescent based tool for fine-scale association mapping", Bioinformatics, 22(18):2317-2318.
    [abstract]

  105. AP Mander, A Bansal (2006), "Stepwise haplotype analysis: Are LD patterns repeatable?", Human Genomics, 2(6):376-382.

  106. Teri A. Manolio, Joan E. Bailey-Wilson and Francis S. Collins (2006), "Genes, environment and the value of prospective cohort studies", Nature Reviews Genetics, 7(10):812-820.
    [abstract]

  107. Jonathan Marchini, David Cutler, Nick Patterson, Matthew Stephens, Eleazar Eskin, Eran Halperin, Shin Lin, Zhaohui S. Qin, Heather M. Munro, Gonçalo R. Abecasis, and Peter Donnelly, for the International HapMap Consortium (2006), "A Comparison of phasing algorithms for trios and unrelated individuals", American Journal of Human Genetics, 78(3):437-450.

  108. Paul Marjoram and Simon Tavaré (2006), "Modern computational approaches for analysing molecular genetic variation data", Nature Reviews Genetics, 7(10):759-770.
    [abstract]

  109. SA McCarroll, TN Hadnott, GH Perry, PC Sabeti, MC Zody, JC Barrett, S Dallaire, SB Gabriel, C Lee, MJ Daly, DM Altshuler, International HapMap Consortium (2006), "Common deletion polymorphisms in the human genome", Nature Genetics, 38(1):86-92.

  110. Phillip McClurg, Mathew T Pletcher, Tim Wiltshire, Andrew I Su (2006), "Comparative analysis of haplotype association mapping algorithms", BMC Bioinformatics, 7:61.
    [abstract]

  111. E Meaburn, LM Butcher, LC Schalkwyk, R Plomin (2006), "Genotyping pooled DNA using 100K SNP microarrays: a step towards genomewide association scans", Nucleic Acids Research, 34(4):e28-e28.
    [abstract]

  112. Ryan E. Mills, Christopher T. Luttig, Christine E. Larkins, Adam Beauchamp, Circe Tsui, W. Stephen Pittard, and Scott E. Devine (2006), "An initial map of insertion and deletion (INDEL) variation in the human genome", Genome Research, 16(9):1182-1190.
    [abstract]

  113. Giovanni Montana (2006), "Statistical methods in genetics", Briefings in Bioinformatics, 7:297-308.
    [abstract]

  114. A Montpetit, M Nelis, P Laflamme, R Magi, X Ke, M Remm, L Cardon, TJ Hudson, A Metspalu (2006), "An evaluation of the performance of tag SNPs derived from HapMap in a Caucasian population", PLoS Genetics, 2(3):e27.

  115. Andrew P. Morris (2006), "A flexible Bayesian framework for modeling haplotype association with disease, allowing for dominance effects of the underlying causative variants", American Journal of Human Genetics, 79(4):679-694.
    [abstract]

  116. V Moskvina, N Craddock, P Holmans, MJ Owen, MC O'Donovan (2006), "Effects of differential genotyping error rate on the type I rrror probability of case-control studies" Human Heredity, 61:55-64
    [abstract]

  117. Richard Mott (2006), "Finding the molecular basis of complex genetic variation in humans and mice", Philosophical Transactions of the Royal Society B: Biological Sciences, 361:393-401.

  118. Michael Mueller, Anuj Goel, Manjula Thimma, Nicholas J Dickens, Timothy J. Aitman, and Jonathan Mangion (2006), "eQTL Explorer: integrated mining of combined genetic linkage and expression experiments", Bioinformatics, 22(4):509-511.
    [abstract]

  119. Dan L. Nicolae, Xiaolin Wu, Kazuaki Miyake, and Nancy J. Cox (2006), "GEL: a novel genotype calling algorithm using empirical likelihood", Bioinformatics, 22(16):1942-1947.
    [abstract]

  120. Pierre Nicolas, Fengzhu Sun, Lei M Li (2006), "A model-based approach to selection of tag SNPs", BMC Bioinformatics, 7:303.

  121. BV North, PC Sham, J Knight, ER Martin, D Curtis (2006), "Investigation of the ability of haplotype association and logistic regression to identify associated susceptibility loci", Annals of Human Genetics, 70(6):893-906.

  122. Dale R Nyholt (2006), "ssSNPer: identifying statistically similar SNPs to aid interpretation of genetic association studies", Bioinformatics, 22(23):2960-2961.
    [abstract]

  123. Paivi Onkamo, Hannu Toivonen (2006), " A survey of data mining methods for linkage disequilibrium mapping", Human Genomics, 2(5):336-340.

  124. Bernice R Packer, Meredith Yeager, Laura Burdett, Robert Welch, Michael Beerman, Liqun Qi, Hugues Sicotte, Brian Staats, Mekhala Acharya, Andrew Crenshaw, Andrew Eckert, Vinita Puri, Daniela S. Gerhard, Stephen J. Chanock (2006), "SNP500Cancer: a public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes", Nucleic Acids Research, 34(database issue):D617-D621.

  125. Z Pan, TA Trikalinos, FK Kavvoura, J Lau, JP Ioannidis (2006), "Local literature bias in genetic epidemiology: an empirical evaluation of the Chinese literature", PLoS Medicine, 2:e334.
    [ abstract]

  126. N Patterson, AL Rrice, D Reich (2006), "Population structure and eigenanalysis", PLoS Genetics, 2(12):e190.

  127. Itsik Pe'er, Yves R. Chretien, Paul IW de Bakker, Jeffrey C Barrett, Mark J Daly, David M Altshuler (2006), "Biases and reconciliation in estimates of linkage disequilibrium in the human genome", American Journal of Human Genetics, 78(4):588-603.

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