Bibliography:
Linkage Disequilibrium Analysis
(2007)
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+ 2007

  1. I Agrafioti, MPH Stumpf (2007), "SNPSTR: a database of compound microsatellite-SNP markers", Nucleic Acids Research, 35 (database issue):D71-D75.

  2. Kwangmi Ahn, Chad Haynes, Wonkuk Kim, Rose St. Fleur, Derek Gordon, and Stephen J. Finch (2007), "The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies", Annals of Human Genetics, 71:249-261

  3. A Albrechtsen, S Castella, G Andersen, T Hansen, O Pedersen, R Nielsen (2007), "A Bayesian multilocus association method: allowing for higher-order interaction in association studies", Genetics, 176(2):1197-1208.
    [ abstract]

  4. Andrew S. Allen, Glen A. Satten (2007), "Inference on haplotype/disease association using parent-affected-child data: the projection conditional on parental haplotypes method", Genetic Epidemiology, 31(3):211-223.

  5. D Altshuler, M Daly (2007), "Guilt beyond a reasonable doubt" (commentary), Nature Genetics, 39(7):813-815.

  6. N Amin, Cm van Duijn, YS Aulchenko (2007), "A genomic background based method for association analysis in related individuals" PLoS ONE, 2(12):e1274.

  7. CI Amos (2007), "Successful design and conduct of genome-wide association studies", Human Molecular Genetics, 16(spec 2):R220-R225.

  8. Aida M. Andrés, Andrew G. Clark, Lawrence Shimmin, Eric Boerwinkle, Charles F. Sing, James E. Hixson (2007), "Understanding the accuracy of statistical haplotype inference with sequence data of known phase", Genetic Epidemiology, 31(7):659-671.
    [ abstract]

  9. Yurii S. Aulchenko, Stephan Ripke, Aaron Isaacs, and Cornelia M. van Duijn (2007), "GenABEL: an R library for genome-wide association analysis", Bioinformatics, 23:1294-1296.
    [abstract]

  10. Kristin L. Ayers, Chiara Sabatti, Kenneth Lange (2007), "A dictionary model for haplotyping, genotype calling, and association testing", Genetic Epidemiology, 31(7):672-683.
    [ abstract]

  11. Pantelis G. Bagos, Georgios K. Nikolopoulos (2007), "A method for meta-analysis of case-control genetic association studies using logistic regression", Statistical Applications in Geneitcs and Molecular Biology, 6(1):17.
    [abstract]

  12. MF Baksh, DJ Balding, TJ Vyse, JC Whittaker (2007), "Family-based association analysis with ordered categorical phenotypes, covariates and interactions", Genetic Epidemiology, 31(1):1-8.

  13. P Balaresque, A Sibert, E Heyer and B Crouau-Roy (2007), "Unbiased interpretation of haplotypes at duplicated microsatellites", Annals of Human Genetics, 71:209-219.

  14. Marc Bauchet, Brian McEvoy, Laurel N. Pearson, Ellen E. Quillen, Tamara Sarkisian, Kristine Hovhannesyan, Ranjan Deka, Daniel G. Bradley, and Mark D. Shriver (2007), "Measuring European population stratification with microarray genotype data", American Journal of Human Genetics, 80:948-956.
    [abstract]

  15. Nidhan K Biswas, Badal Dey and Partha P Majumder (2007), "Using HapMap data: a cautionary note", European Journal of Human Genetics, 15:246-249.
    [abstract]

  16. Joann A. Boughman (2007), "Genomewide association studies data sharing: National Institutes of health policy process" (society news), American Journal of Human Genetics, 80:581-583.

  17. Anne-Laure Boulesteix, Carolin Strobl, Stefan Weidinger, H.-Erich Wichmann, Stefan Wagenpfeil (2007), "Multiple testing for SNP-SNP interactions", Statistical Applications in Geneitcs and Molecular Biology, 6:37.
    [abstract]

  18. Catherine Bourgain, Emmanuelle Génin, Nancy Cox and Françoise Clerget-Darpoux (2007), "Are genome-wide association studies all that we need to dissect the genetic component of complex human diseases?", European Journal of Human Genetics, 15:260-263.
    [abstract]

  19. Peter J. Bradbury, Zhiwu Zhang, Dallas E. Kroon, Terry M. Casstevens, Yogesh Ramdoss, Edward S Buckler (2007), "TASSEL: software for association mapping of complex traits in diverse samples", Bioinformatics, 23(19):2633-2635.
    [abstract]

  20. BL Browning, SR Browning (2007), "Efficient multilocus association testing for whole genome association studies using localized haplotype clustering", Genetic Epidemiology, 31(5):365-375.
    [ abstract]

  21. SR Browning, BL Browning (2007), "Rapid and accurate haplotype phasing and missing data inference for whole genome association studies using localized haplotype clustering", American Journal of Human Genetics, 81:1084-1097.

  22. SR Browning, J Thomas (2007) "Multilocus analysis of GAW15 NARAC chromosome 18 case-control data", BMC Proceedings, 1(Suppl 1): S11.

  23. David F Burke, Catherine L Worth, Eva-Maria Priego, Tammy Cheng, Luc J Smink, John A Todd, Tom L Blundell (2007) "Genome bioinformatic analysis of nonsynonymous SNPs", BMC Bioinformatics, 8:301.
    [abstract]

  24. Harry Campbell, Andrew D Carothers, Igor Rudan, Caroline Hayward, Zrinka Biloglav, Lovorka Barac, Marijana Pericic, Branka Janicijevic, Nina Smolej-Narancic, Ozren Polasek, Ivana Kolcic, James L. Weber, Nicholas D. Hastie, Pavao Rudan and Alan F. Wright (2007), "Effects of genome-wide heterozygosity on a range of biomedically relevant human quantitative traits", Human Molecular Genetics, 16(2):233-241.
    [abstract]

  25. Neil E. Caporaso (2007), "Integrative study designs-- next step in the evolution of molecular epidemiology?", Cancer Epidemiology Biomarkers & Prevention, 16:365-366.

  26. Matthew A. Care, Chris J. Needham, Andrew J. Bulpitt, and David R. Westhead (2007), "Deleterious SNP prediction: be mindful of your training data!", Bioinformatics, 23:664-672.
    [abstract]

  27. B Carvalho, H Bengtsson, TP Speed, RA Irizarry (2007), "Exploration, normalization, and genotype calls of high density oligonucleotide SNP array data", Biostatistics, 8(2):485-499.
    [abstract]

  28. Juliet Chapman, David Clayton (2007), "One degree of freedom for dominance in indirect association studies", Genetic Epidemiology, 31(3):261-271.

  29. Juliet Chapman, David Clayton (2007), "Detecting association using epistatic information", Genetic Epidemiology, 31(8):894-909.
    [ abstract]

  30. J Chen, N Chatterjee (2007), "Exploiting Hardy-Weinberg equilibrium for efficient screening of single SNP associations from case-control studies", Human Heredity, 63:196-204.
    [ abstract]

  31. Jian-Min Chen, David N. Cooper, Nadia Chuzhanova, Claude Férec, George P. Patrinos (2007), "Gene conversion: mechanisms, evolution and human disease", Nature Reviews Genetics, 8:762-775.
    [ abstract]

  32. TDT
    Wei-Min Chen, Gonçalo R. Abecasis (2007), "Family-based association tests for genomewide association scans", American Journal of Human Genetics, 81:913-926.
    [abstract]

  33. Xiang Chen, Ching-Ti Liu, Meizhuo Zhang, Heping Zhang (2007), "A forest-based approach to identifying gene and gene-gene interactions", Proceedings of National Academy of Sciences, 104(49):19199-19203.
    [abstract]

  34. KF Cheng (2007), "Analysis of case-only studies accounting for genotyping error", Annals of Human Genetics, 71:238-248.

  35. KF Cheng, WJ Lin (2007), "Simultaneously correcting for population stratification and for genotyping error in case-control association studies", American Journal of Human Genetics, 81:726-743.
    [abstract]

  36. Vivian G. Cheung, Joshua T. Burdick, Deborah Hirschmann, and Michael Morley (2007), "Polymorphic variation in human meiotic recombination", American Journal of Human Genetics, 80:526-530.
    [abstract]

  37. Kaare Christensen, Jeffrey C. Murray (2007), "What genome-wide association studies can do for medicine", New England Journal of Medicine, 356:1094-1097.
    [abstract]

  38. TDT
    Ren-Hua Chung, Elizabeth R. Hauser, Eden R. Martin (2007), "Interpretation of simultaneous linkage and family-based association tests in genome screens", Genetic Epidemiology, 31(2):134-142.

  39. TDT
    Ren-Hua Chung, Richard W Morrisc, Li Zhang, Yi-Ju Li, Eden R Martin (2007), "X-APL: an improved family-based test of association in the presence of linkage for the X chromosome", American Journal of Human Genetics, 80(1):59-68.
    [ abstract]

  40. Geraldine M Clarke, Kim W Carter, Lyle J Palmer, Andrew P Morris, Lon R Cardon (2007), "Fine mapping versus replication in whole-genome association studies", American Journal of Human Genetics, 81:995-1005.
    [abstract]

  41. Geraldine Clarke, Alice S. Whittemore (2007), "Comparison of admixture and association mapping in admixed families", Genetic Epidemiology, 31(7):763-775.
    [ abstract]

  42. David Clayton, Hin-Tak Leung (2007), "An R package for analysis of whole-genome association studies", Human Heredity, 64:45-51.

  43. Karen N. Conneely, Michael Boehnke (2007), "So many correlated tests, so little time! Rapid adjustment of P values for multiple correlated tests", American Journal of Human Genetics, 81:1158-1168.
    [abstract]

  44. Graham Coop and Molly Przeworski (2007), "An evolutionary view of human recombination", Nature Reviews Genetics, 8:23-34.
    [ abstract]

  45. Marc Coram, Hua Tang (2007), "Improving population-specific allele frequency estimates by adapting supplemental data: An empirical Bayes approach", Annals of Applied Statistics, 1(2):459-479.
    [abstract]

  46. TDT
    P Croiseau, E Génin, HJ Cordell (2007), "Dealing with missing data in family-based association studies: a multiple imputation approach", Human Heredity, 63:229-238.
    [ abstract]

  47. R Culverhouse (2007), "The use of the restricted partition method with case-control data", Human Heredity, 63:93-100.
    [ abstract]

  48. Karen Curtin, Jathine Wong, Kristina Allen-Brady, Nicola J. Camp (2007), "PedGenie: meta genetic association testing in mixed family and case-control designs", BMC Bioinformatics, 8:448.
    [abstract]

  49. Ofir Davidovich, Gad Kimmel, Ron Shamir (2007), "GEVALT: An integrated software tool for genotype analysis", BMC Bioinformatics, 8:36
    [abstract]

  50. RL Davis, MJ Khoury (2007), "The emergence of biobanks: practical design considerations for large population-based studies of gene-environment interactions", Community Genet., 10(3):181-185.

  51. Maria De Iorio, Claudio J. Verzilli (2007), "A spatial probit model for fine-scale mapping of disease genes", Genetic Epidemiology, 31(3):252-260.

  52. Olivier Delaneau, Cédric Coulonges, Pierre-Yves Boelle, George Nelson, Jean-Louis Spadoni, Jean-François Zagury (2007), "ISHAPE: new rapid and accurate software for haplotyping", BMC Bioinformatics, 8:205.
    [abstract]

  53. Keyue Ding, Iftikhar J Kullo (2007), "Methods for the selection of tagging SNPs: a comparison of tagging efficiency and performance", European Journal of Human Genetics, 15:228-236.
    [abstract]

  54. Pan Du, Warren A Kibbe, Simon M Lin (2007), "nuID: a universal naming scheme of oligonucleotides for Illumina, Affymetrix, and other microarrays", Biology Direct, 2:16.
    [ abstract]

  55. J Dupuis, K Albers, K Allen-Brady, K Cho, RC Elston, HJ Kappen, H Tang, A Thomas, G Thomson, E Tsung, Q Yang, W Zhang, K Zhao, G Zheng, JT Ziegler (2007), "Effect of linkage disequilibrium between markers in linkage and association analyses" (meeting report), Genetic Epidemiology, 31(suppl 1):S139-S148.

  56. Josee Dupuis, David O Siegmund, Benjamin Yakir (2007), "A unified framework for linkage and association analysis of quantitative traits", Proceedings of National Academy of Sciences, 104(51):20210-20215.
    [abstract]

  57. Joanna L. Elson, Kari Majamaa, Neil Howell, and Patrick F. Chinnery (2007), "Associating mitochondrial DNA variation with complex traits", American Journal of Human Genetics, 80:378-382.

  58. RC Elston, DY Lin, G Zheng (2007), "Multistage sampling for genetic studies", Annual Reviews of Genomics and Human Genetics, 8:327-342.

  59. Michael P. Epstein, Andrew S. Allen, and Glen A. Satten (2007), "A simple and improved correction for population stratification in case-control studies", American Journal of Human Genetics, 80:921-930.
    [ abstract]

  60. John M Eppley, Gene W Tyson, Wayne M Getz, Jillian F Banfield (2007), "Strainer: software for analysis of population variation in community genomic datasets", BMC Bioinformatics, 8:398.
    [abstract]

  61. D Falush, M Stephens, JK Pritchard (2007), "Inference of population structure using multilocus genotype data: dominant markers and null alleles", Molecular Ecology Notes, 7(4):574-578.

  62. David Fardo, Juan C. Celedón, Benjamin A. Raby, Scott T. Weiss, Christoph Lange (2007), "On dichotomizing phenotypes in family-based association tests: quantitative phenotypes are not always the optimal choice", Genetic Epidemiology, 31(5):376-382.
    [ abstract]

  63. Tao Feng, Shuanglin Zhang and Qiuying Sha (2007), "Two-stage association tests for genome-wide association studies based on family data with arbitrary family structure", European Journal of Human Genetics, 15:1169-1175.
    [abstract]

  64. Timothy M. Frayling (2007), "Genome-wide association studies provide new insights into type 2 diabetes aetiology", Nature Reviews Genetics, 8:657-662.
    [ abstract]

  65. Michelle Gardner (2007), Genetic Diversity of 'Brain Genes' Across Worldwide Populations . Ph.D Thesis, Department de Ciencies Experimentals i de la Salut, University Pompeu Fabra.
    [ PDF]

  66. Chad Garner (2007), "Upward bias in odds ratio estimates from genome-wide association studies", Genetic Epidemiology, 31(4):288-295.
    [ abstract]

  67. Dario Gasbarra, Matti Pirinen, Mikko J. Sillanpaa and Elja Arjas (2007), "Estimating genealogies from linked marker data: a Bayesian approach", BMC Bioinformatics, 8:411.
    [abstract]

  68. W. James Gauderman, Cassandra Murcray, Frank Gilliland, David V. Conti (2007), "Testing association between disease and multiple SNPs in a candidate gene", Genetic Epidemiology, 31(5):383-395.
    [ abstract]

  69. Tom R Gaunt, Santiago Rodriguez, Ian NM Day (2007), "Cubic exact solutions for the estimation of pairwise haplotype frequencies: implications for linkage disequilibrium analyses and a web tool 'CubeX'", BMC Bioinformatics, 8:428.
    [abstract]

  70. Geof H. Givens, Isin Ozaksoy (2007), "Population structure and covariate analysis based on pairwise microsatellite allele matching frequencies", Statistical Applications in Geneitcs and Molecular Biology, 6:31.
    [abstract]

  71. Juan R. González, Lluís Armengol, Xavier Solé, Elisabet Guinó, Josep M. Mercader, Xavier Estivill, and Víctor Moreno (2007), "SNPassoc: an R package to perform whole genome association studies", Bioinformatics, 23:654-655.
    [abstract]

  72. EL Goode, BL Fridley, Z Sun, EJ Atkinson, AS Nord, SK McDonnell, GP Jarvik, M de Andrade, SL Slager (2007), "Comparison of tagging single-nucleotide polymorphism methods in association analyses", BMC Proceedings, 1(Suppl 1):S6

  73. Derek Gordon, Chad Haynes, Yaning Yang, Patricia L. Kramer, Stephen J. Finch (2007), "Linear trend tests for case-control genetic association that incorporate random phenotype and genotype misclassification error", Genetic Epidemiology, 31(8):853-870.
    [ abstract]

  74. Celia M.T. Greenwood, Jagadish Rangrej, Lei Sun (2007), "Optimal selection of markers for validation or replication from genome-wide association studies", Genetic Epidemiology, 31(5):396-407.
    [ abstract]

  75. C Charles Gu, Kai Yu, Eric Boerwinkle (2007), "Measuring marker information content by the ambiguity of block boundaries observed in dense SNP data", Annals of Human Genetics, 71(1):127-140.

  76. GAIN Collaborative Research Group, TA Manolio et al. (2007), "New models of collaboration in genome-wide association studies: the Genetic Association Information Network", Nature Genetics, 39(9):1045-1051.

  77. S Gu, AJ Pakstis, H Li, WC Speed, JB Kidd, KK Kidd (2007), "Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations", European Journal of Human Genetics, 15(3):302-312.
    [abstract]

  78. M Guedj, E Della-Chiesa, F Picard and G Nuel (2007), "Computing power in case-control association studies through the use of quadratic approximations: application to meta-statistics", Annals of Human Genetics, 71: 262-270.

  79. TDT
    Chao-Yu Guo, Kathryn L. Lunetta, Anita L. DeStefano, Jose M. Ordovas, L. Adrienne Cupples (2007), "Informative-Transmission Disequilibrium Test (i-TDT): combined linkage and association mapping that includes unaffected offspring as well as affected offspring", Genetic Epidemiology, 31(2):115-133.

  80. Stephen L. Guthery, Benjamin A. Salisbury, Manish S. Pungliya, J. Claiborne Stephens, and Michael Bamshad (2007), "The structure of common genetic variation in United States populations", American Journal of Human Genetics, 81:1221-1231.
    [abstract]

  81. TDT
    Dana B. Hancock, Eden R. Martin, Yi-Ju Li, William K. Scott (2007), "Methods for interaction analyses using family-based case-control data: conditional logistic regression versus generalized estimating equations", Genetic Epidemiology, 31(8):883-893.
    [ abstract]

  82. K Hao (2007), "Genome-wide selection of tag SNPs using multiple-marker correlation", Bioinformatics, 23(23):3178-3184.
    [abstract]

  83. K Hao, S Cawley (2007), "Differential dropout among SNP genotypes and impacts on association tests", Human Heredity, 63:219-228.
    [ abstract]

  84. K. Hao, X. Di, and S. Cawley (2007), "LdCompare: rapid computation of single- and multiple-marker r2 and genetic coverage", Bioinformatics, 23:252-254.
    [abstract]

  85. A Geert Heidema, Edith JM Feskens, Pieter AFM Doevendans, Henk JT Ruven, Hans C van Houwelingen, Edwin CM Mariman, Jolanda MA Boer (2007), "Analysis of multiple SNPs in genetic association studies: comparison of three multi-locus methods to prioritize and select SNPs", Genetic Epidemiology, 31(8):910-921.
    [ abstract]

  86. JP Higgins, J Little, JP Ioannidis, MS Bray, TA Manolio, L Smeeth, JA Sterne, B Anagnostelis, AS Butterworth, J Danesh, C Dezateux, JE Gallacher, M Gwinn, SJ Lewis, C Minelli, PD Pharoah, G Salanti, S Sanderson, LA Smith, E Taioli, JR Thompson, SG Thompson, N Walker, RL Zimmern, MJ Khoury (2007), "Turning the pump handle: evolving methods for integrating the evidence on gene-disease association", American Journal of Epidemiology, 166(8):863-866.

  87. TDT
    Yue-Qing Hu, Ji-Yuan Zhou, Fengzhu Sun, Wing K. Fung (2007), "The transmission disequilibrium test and imprinting effects test based on case-parent pairs", Genetic Epidemiology, 31(4):273-287.
    [ abstract]

  88. J Hua, D W Craig, M Brun, J Webster, V Zismann, W Tembe, K Joshipura, M J Huentelman, E R Dougherty, and D A Stephan (2007), "SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays", Bioinformatics, 23(1):57-63.
    [abstract]

  89. BE Huang, CI Amos, DY Lin (2007), "Detecting haplotype effects in genomewide association studies", Genetic Epidemiology, 31(8):803-812.
    [ abstract]

  90. BE Huang and DY Lin (2007), "Efficient association mapping of quantitative trait loci with selective genotyping", American Journal of Human Genetics, 80:567-576.
    [abstract]

  91. G Huang, P Jeavons, D Kwiatkowski (2007), "Exact and heuristic approaches for identifying disease-associated SNP motif", Proceedings of the 5th Asia-Pacific Bioinformatics Conference eds. D Sankoff, L Wang, F Chin, pp. 175-184 (Imperial College Press, London).

  92. Peter Huggins, Lior Pachter and Bernd Sturmfels (2007), "Toward the human genotope", Bulletin of Mathematical Biology, 69(8):2723-2735.
    [ abstract]

  93. AL Hughes (2007), "Looking for Darwin in all the wrong places: the misguided quest for positive selection at the nucleotide sequence level", Heredity, 99:364-373.
    [ abstract]

  94. David J Hunter, Peter Kraft (2007), "Drinking from the fire hose -- statistical issues in genomewide association studies", New England Journal of Medicine, 357:436-439.
    [abstract]

  95. Robert P Igo, Jr., Douglas Londono, Katherine Miller, Antonio R Parrado, Shannon RE Quade, Moumita Sinha, Sulgi Kim, Sungho Won, Jing Li, Katrina AB Goddard (2007), "Density-based clustering in haplotype analysis for association mapping", BMC Proceedings, 1(suppl 1):S27.
    [html]

  96. JP Ioannidis (2007), "Genetic and molecular epidemiology", Journal of Epidemiology and Community Health, 61(9):757-758.

  97. JP Ioannidis, P Boffetta, J Little, TR O'brien, AG Uitterlinden, P Vineis, DJ Balding, A Chokkalingam, SM Dolan, WD Flanders, JP Higgins, MI McCarthy, DH McDermott, GP Page, TR Rebbeck, D Seminara, MJ Khoury (2007) "Assessment of cumulative evidence on genetic associations: interim guidelines", International Journal of Epidemiology, 37(1):120-132.
    [abstract]

  98. JP Ioannidis, NA Patsopoulos, E Evangelou (2007), "Heterogeneity in meta-analyses of genome-wide association investigations", PLoS ONE, 2:e841.

  99. International HapMap Consortium, KA Frazer et al. (2007), "A second generation human haplotype map of over 3.1 million SNPs", Nature, 449(7146):851-861.

  100. SK Iyengar, RA Elston (2007), "The genetic basis of complex traits: rare variants or 'common gene, common disease'?", Methods in Molecular Biology, 376:71-84.

  101. AC Janssens, R Moonesinghe, Q Yang, EW Steyerberg, CM van Duijn, MJ Khoury (2007), "The impact of genotype frequencies on the clinical validity of genomic profiling for predicting common chronic diseases", Genet Med., 9(8):528-535.

  102. Gudrun Jonasdottir, Keith Humphreys, Juni Palmgren (2007), "Testing association in the presence of linkage - a powerful score for binary traits ", Genetic Epidemiology, 31(6):528-540.
    [ abstract]

  103. J Joo, X Tian, G Zheng, M Stylianou, JP Lin, NL Geller (2007), "Joint analysis of case-parents trio and unrelated case-control designs in large scale association studies", BMC Proceedings, 1(Suppl 1):S28.

  104. Jack W. Kent Jr, Thomas D. Dyer, Harald H. H. Göring, John Blangero (2007), "Type I error rates in association versus joint linkage/association tests in related individuals", Genetic Epidemiology, 31(2):173-177.

  105. MJ Khoury, J Little, M Gwinn, JP Ioannidis (2007), "On the synthesis and interpretation of consistent but weak gene-disease associations in the era of genome-wide association studies", International Journal of Epidemiology, 36(2):439-445.
    [ abstract]

  106. MJ Khoury, J Little, J Higgins, JP Ioannidis, M Gwinn (2007), "Reporting of systematic reviews: the challenge of genetic association studies", PLoS Medicine, 4(6):e211.

  107. Gad Kimmel, Michael I. Jordan, Eran Halperin, Ron Shamir, Richard M. Karp (2007), "A randomization test for controlling population stratification in whole-genome association studies", American Journal of Human Genetics, 81:895-905.
    [abstract]

  108. Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, and Eran Halperin (2007), "HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling", Bioinformatics, 23(22):3048-3055.
    [ abstract]

  109. L Klei, K Roeder (2007), "Testing for association based on excess allele sharing in a sample of related cases and controls", Human Genetics, 121(5):549-557.
    [ abstract]

  110. Jared R. Kohler and David J. Cutler (2007), "Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies", American Journal of Human Genetics, 81:684-699.
    [abstract]

  111. Bernard A. Konfortov, Alan T. Bankier and Paul H. Dear (2007), "An efficient method for multi-locus molecular haplotyping", Nucleic Acids Research, 35(1):e6.

  112. Peter Kraft and Daniel O. Stram (2007), "Re: the use of inferred haplotypes in downstream analysis" (letters to the editor), American Journal of Human Genetics, 81:863-865.
    [abstract]

  113. P Kraft, YC Yen, DO Stram, J Morrison, WJ Gauderman (2007), "Exploiting gene-environment interaction to detect genetic associations", Human Heredity, 63:111-119
    [ abstract]

  114. Gregory V. Kryukov, Len A. Pennacchio, and Shamil R. Sunyaev (2007), "Most rare missense alleles are deleterious in humans: implications for complex disease and association studies", American Journal of Human Genetics, 80:727-739.
    [abstract]

  115. LC Kwee, MP Epstein, AK Manatunga, R Duncan, AS Allen, GA Satten (2007), "Simple methods for assessing haplotype-environment interactions in case-only and case-control studies", Genetic Epidemiology, 31(1):75-90.

  116. PA Kyzas, D Denaxa-Kyza, JP Ioannidis (2007), "Almost all articles on cancer prognostic markers report statistically significant results", European Journal of Cancer, 43(17):2559-2579.

  117. D Labuda, C Labbe, S Langlois, JF Lefebvre, V Freytag, C Moreau, J Sawicki, P Beaulieu, T Pastinen, TJ Hudson, D Sinnett (2007), "Patterns of variation in DNA segments upstream of transcription start sites", Human Mutation, 28(5):441-450.

  118. Renzhen Lai, Hong Zhang, Yaning Yang (2007), "Repeated measurement sampling in genetic association analysis with genotyping errors", Genetic Epidemiology, 31(2):143-153.

  119. Niels Landwehr, Taneli Mielikäinen, Lauri Eronen, Hannu Toivonen, Heikki Mannila (2007), "Constrained hidden Markov models for population-based haplotyping", BMC Bioinformatics, 8(suppl 2):S9.
    [abstract]

  120. Jason M Laramie, Jemma B Wilk, Anita L DeStefano, Richard H Myers (2007), "HaploBuild: an algorithm to construct non-contiguous associated haplotypes in family based genetic studies", Bioinformatics, 23(16):2190-2192.
    [ abstract]

  121. Winston Lau, Tai-Yue Kuo, William Tapper, Simon Cox, and Andrew Collins (2007), "Exploiting large scale computing to construct high resolution linkage disequilibrium maps of the human genome", Bioinformatics, 23: 517-519.
    [ abstract]

  122. Seung Yeoun Lee, Yujin Chung, Robert C. Elston, Youngchul Kim, Taesung Park (2007), "Log-linear model-based multifactor dimensionality reduction method to detect gene-gene interactions", Bioinformatics, 23(19):2589-2595.
    [ abstract]

  123. Guillaume Lettre, Christoph Lange, Joel N. Hirschhorn (2007), "Genetic model testing and statistical power in population-based association studies of quantitative traits", Genetic Epidemiology, 31(4):358-362.
    [ abstract]

  124. Juan Pablo Lewinger, David V Conti, James W Baurley, Timothy J Triche, Duncan C Thomas (2007), "Hierarchical Bayes prioritization of marker associations from a genome-wide association scan for further investigation", Genetic Epidemiology, 31(8):871-882.
    [ abstract]

  125. MX Li, L Jiang, SL Ho, YQ Song, PC Sham (2007), "IGG: A tool to integrate GeneChips for genetic studie", Bioinformatics, 23(22):3105-3107.
    [abstract]

  126. Xiaohong Li, Andrea S. Foulkes, Recai M. Yucel,Stephen M. Rich (2007), "An expectation maximization approach to estimate malaria haplotype frequencies in multiply infected children", Statistical Applications in Geneitcs and Molecular Biology, 6:33.
    [abstract]

  127. Yi Li, Wing-Kin Sung, and Jian Jun Liu (2007), "Association mapping via regularized regression analysis of single-nucleotide-polymorphism haplotypes in variable-sized sliding windows", American Journal of Human Genetics, 80:705-715.
    [abstract]

  128. L Liang, S Zollner, GR Abecasis (2007), "GENOME: a rapid coalescent-based whole genome simulator", Bioinformatics, 23(12):1565-1567.
    [abstract]

  129. DY Lin, BE Huang (2007), "The use of inferred haplotypes in downstream analyses", American Journal of Human Genetics, 80(3):577-579.

  130. Ping-I Lin, Jeffery M. Vance, Margaret A. Pericak-Vance, and Eden R. Martin (2007), "No gene is an island: the flip-flop phenomenon", American Journal of Human Genetics, 80:531-538.
    [abstract]

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