Bibliography:
Linkage Disequilibrium Analysis
(2008)
front | introduction| 08| 07 | 06 | 05 | 04 | 03 | 02 | 01 | 00 | 99 | 98 | 97 | 96 | 95 | 94 | 93 | 92 | 91 | 90
89 | 88 | 87 | 86 | 85 | 84 | 83 | 82 | 81 | 80 | 70s | 60s | 50s | 40s | 30s | 20s | 10s | mirror

+ 2008

  1. Andrew S. Allen, Glen A. Satten (2008), "Robust estimation and testing of haplotype effects in case-control studies", Genetic Epidemiology, 32(1):29-40.
    [ abstract]

  2. Carl A Anderson, Fredrik H Pettersson, Jeffrey C Barrett, Joanna J Zhuang, Jiannis Ragoussis, Lon R Cardon, Andrew P Morris (2008), "Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms", American Journal of Human Genetics, 83(1):112-119.
    [ abstract]

  3. Guillaume Assié, Thomas LaFramboise, Petra Platzer, Jérôme Bertherat, Constantine A Stratakis, Charis Eng (2008), "SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples", American Journal of Human Genetics, 82(4):903-915.
    [ abstract]

  4. Luis B Barreiro, Guillaume Laval, Hélène Quach, Etienne Patin, Lluís Quintana-Murci (2008), "Natural selection has driven population differentiation in modern humans", Nature Genetics, 40:340-345.
    [ abstract]

  5. J Benn-Torres, C Bonilla, C M Robbins, L Waterman, T Y Moses, W Hernandez, E R Santos, F Bennett, W Aiken, T Tullock, K Coard, A Hennis, S Wu, B Nemesure, M C Leske, V Freeman, J Carpten and R A Kittles (2008), "Admixture and population stratification in African Caribbean populations", Annals of Human Genetics, 72(1): 90-98.
    [ abstract]

  6. Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki, Alan Templeton (2008), "Panel construction for mapping in admixed populations via expected mutual information", Genome Research, 18:661-667.
    [abstract]

  7. Walter Bodmer, Carolina Bonilla (2008), "Common and rare variants in multifactorial susceptibility to common diseases", Nature Genetics, 40:695-701.
    [abstract]

  8. SR Browning (2008), "Estimation of pairwise identity by descent from dense genetic marker data in a population sample of haplotypes", Genetics, 178:2123-2132.

  9. BL Browning, SR Browning (2008), "Haplotypic analysis of Wellcome Trust Case Control Consortium data", Human Genetics, 123:273-280.

  10. Yi-Hau Chen, Nilanjan Chatterjee, Raymond J. Carroll (2008), "Retrospective analysis of haplotype-based case-control studies under a flexible model for gene-environment association", Biostatistics, 9(1):81-99.
    [abstract]

  11. Zhixiang Chen, Bin Fu, Robert Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu (2008), "Linear time probabilistic algorithms for the singular haplotype reconstruction problem from SNP fragments", in Proceedings of the 6th Asia-Pacific Bioinformatics Conference eds. A Brazma, S Miyano, T Akutsu, pp.333-342 (Imperial College Press).

  12. Yen-Feng Chiu, Kung-Yee Liang, Lee-Ming Chuang, Terri H Beaty (2008), "Incorporation of covariates into multipoint linkage disequilibrium mapping in case-control studies", Genetic Epidemiology, 32(2):143-151.
    [ abstract]

  13. LA Cupples (2008), "Family study designs in the age of genome-wide association studies: experience from the Framingham Heart Study", Current Opinion in Lipidology, 19(2):144-150.
    [abstract]

  14. TDT
    Jie Ding, Shili Lin (2008), "XMCPDT does have correct type I error rates" (letters to the editor), American Journal of Human Genetics, 82(2):528-530.
    [ abstract]

  15. DM Evans, JC Barrett, LR Cardon (2008), "To what extent do scans of non-synonymous SNPs complement denser genome-wide association studies?", European Journal of Human Genetics, to appear.

  16. Arpita Ghosh, Fei Zou, Fred A Wright (2008), "Estimating odds ratios in genome scans: an approximate conditional likelihood approach", American Journal of Human Genetics, 82(5):1064-1074.
    [ abstract]

  17. IP Gorlov, OY Gorlova, SR Sunyaev, MR Splitz, CI Amos (2008), "Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms", American Journal of Human Genetics, 82(1):100-112.
    [ abstract]

  18. C Charles Gu, K Yu, S Ketkar, Alan R Templeton, DC Rao (2008), "On transferability of genome-wide tagSNPs", Genetic Epidemiology, 32(2):89-97.
    [ abstract]

  19. RL Hanson and WC Knowler (2008), "Design and analysis of genetic association studies to finely map a locus identified by linkage analysis: assessment of the extent to which an association can account for the linkage", Annals of Human Genetics, 72(1):126-139.
    [ abstract]

  20. Clive J Hoggart, Taane G Clark, Maria De Iorio, John C Whittaker, David J Balding (2008), "Genome-wide significance for dense SNP and resequencing data", Genetic Epidemiology, 32(2):179-185.
    [ abstract]

  21. Mark M Iles (2008), "Quantification and correction of bias in tagging SNPs caused by insufficient sample size and marker density by means of haplotype-dropping", Genetic Epidemiology, 32(1):20-28.
    [ abstract]

  22. A Cecile JW Janssens, Marta Gwinn, Linda A Bradley, Ben A Oostra, Cornelia M van Duijn, Muin J Khoury (2008), "A critical appraisal of the scientific basis of commercial genomic profiles used to assess health risks and personalize health interventions", American Journal of Human Genetics, 82(3):593-599.
    [ abstract]

  23. HM Kang, NA Zaitlen, CM Wade, A Kirby, D Heckerman, MJ Daly, E Eskin (2008), "Efficient control of population structure in model organism association mapping", Genetics, 178(3):1709-1723.

  24. Mamoru Kato, Yusuke Nakamura, Tatsuhiko Tsunoda (2008), "An algorithm for inferring complex haplotypes in a region of copy-number variation", American Journal of Human Genetics, 83(2):157-169.
    [ abstract]

  25. Lambertus Klei, Diana Luca, B. Devlin, Kathryn Roeder (2008), "Pleiotropy and principal components of heritability combine to increase power for association analysis", Genetic Epidemiology, 32(1):9-19.
    [ abstract]

  26. K Knight, D Curtis, PC Sham (2008), "CLUMPHAP: a simple tool for performing haplotype-based association analysis", Genetic Epidemiology, to appear.

  27. Dmitry A Konovalov, Dik Heg (2008), "Estimation of population allele frequencies from small samples containing multiple generations", in Proceedings of the 6th Asia-Pacific Bioinformatics Conference eds. A Brazma, S Miyano, T Akutsu, pp.321-332 (Imperial College Press).

  28. Leonid Kruglyak (2008), "The road to genome-wide association studies" (essay), Nature Reviews Genetics, 9:314-318.
    [abstract]

  29. B Kulle, A Frigessi, H Edvardsen, V Kristensen, L Wojnowski (2008), "Accounting for haplotype phase uncertainty in linkage disequilibrium estimation", Genetic Epidemiology, 32(2):168-178.
    [ abstract]

  30. quantitative-trait
    Lydia Coulter Kwee, Dawei Liu, Xihong Lin, Debashis Ghosh, Michael P Epstein (2008), "A powerful and flexible multilocus association test for quantitative traits", American Journal of Human Genetics, 82(2):386-397.
    [ abstract]

  31. Niels Landwehr, Taneli Mielikäinen (2008), "Probabilistic logic learning from haplotype data", Lecture Notes in Computer Science, Vol 4911, pp.263-286.
    [ abstract]

  32. Jessica Lasky-Su, Helen N Lyon, Valur Emilsson, Iris M Heid, Cliona Molony, Benjamin A Raby, Ross Lazarus, Barbara Klanderman, Manuel E Soto-Quiros, Lydiana Avila, Edwin K Silverman, Gudmar Thorleifsson, Unnur Thorsteinsdottir, Florian Kronenberg, Caren Vollmert, Thomas Illig, Caroline S Fox, Daniel Levy, Nan Laird, Xiao Ding, Matt B McQueen, Johannah Butler, Kristin Ardlie, Constantina Papoutsakis, George Dedoussis, Christopher J O'Donnell, H-Erich Wichmann, Juan C Celedón, Eric Schadt, Joel Hirschhorn, Scott T Weiss, Kari Stefansson, Christoph Lange (2008), "On the replication of genetic associations: timing can be everything!", American Journal of Human Genetics, 82(4):849-858.
    [ abstract]

  33. Seunggeun Lee, Patrick F Sullivan, Fei Zou, Fred A Wright (2008), "Comment on a simple and improved correction for population stratification" (letter to the editor), American Journal of Human Genetics, 82(2):524-526.
    [ abstract]

  34. Stephen Leslie, Peter Donnelly, Gil McVean (2008), "A statistical method for predicting classical HLA alleles from SNP data", American Journal of Human Genetics, 82(1):48-56.
    [ abstract]

  35. Chun Li, Mingyao Li (2008), "GWAsimulator: a rapid whole-genome simulation program", Bioinformatics, 24:140-142.
    [abstract]

  36. TDT
    MX Li, L Jiang, YQ Song, PC Sham (2008), "Power of transmission/disequilibrium tests in admixed populations", Genetic Epidemiology, to appear.

  37. Q Li, G Zheng, Z Li, K Yu (2008), "Efficient Approximation of P-value of the Maximum of Correlated Tests, with Applications to Genome-Wide Association Studies", Annals of Human Genetics, to appear.

  38. Q Li, K Yu, Z Li, G Zheng (2008), "MAX-rank: a simple and robust genome-wide scan for case-control association studies", Human Genetics, 123(6):617-623.

  39. Wentian Li (2008), "Three lectures on case-control genetic association analysis", Briefings in Bioinformatics, 9:1-13.
    [abstract]

  40. W Li, YJ Suh, Y Yang (2008), "Exploring case-control genetic association tests using phase diagrams", Computational Biology and Chemistry, to appear.

  41. DY Lin, Y Hu, BE Huang (2008), "Simple and efficient analysis of disease association with missing genotype data", American Journal of Human Genetics, 82(2):444-452.
    [ abstract]

  42. Qingzhong Liu, Jack Yang, Zhongxue Chen, Mary Qu Yang, Andrew H Sung, Xudong Huang (2008), "Supervised learning-based tagSNP selection for genome-wide disease classifications", BMC Genomics, 9(suppl 1):S6.
    [abstract]

  43. Diana Luca, Steven Ringquist, Lambertus Klei, Ann B Lee, Christian Gieger, H-Erich Wichmann, Stefan Schreiber, Michael Krawczak, Ying Lu, Alexis Styche, Bernie Devlin, Kathryn Roeder, Massimo Trucco (2008), "On the use of general control samples for genome-wide association studies: genetic matching highlights causal variants", American Journal of Human Genetics, 82(2):453-463.
    [ abstract]

  44. TDT
    Stuart Macgregor (2008), "Optimal two-stage testing for family-based genome-wide association studies" (letters to the editor), American Journal of Human Genetics, 82(3):797-799.
    [ abstract]

  45. MI McCarthy, GR Abecasis, LR Cardon, DB Goldstein, J Little, JP Ioannidis, JN Hirschhorn (2008), "Genome-wide association studies for complex traits: consensus, uncertainty and challenges", Nature Reviews Genetics, 9:356-369.
    [abstract]

  46. NE Morton (2008), "Into the Post-HapMap Era", Advances in Genetics, 60:727-742.

  47. S Myles, K Tang, M Somel, R E Green, J Kelso and M Stoneking (2008), "Identification and analysis of genomic regions with large between-population differentiation in humans" Annals of Human Genetics, 72(1): 99-110.
    [ abstract]

  48. John Novembre, Matthew Stephens (2008), "Interpreting principal component analyses of spatial population genetic variation", Nature Genetics, 40:646-649.
    [ abstract]

  49. Bret A Payseur, Michael Place, James L Weber (2008), "Linkage disequilibrium between STRPs and SNPs across the human genome", American Journal of Human Genetics, 82(5):1039-1050.
    [ abstract]

  50. I Pe'er, R Yelensky, D Altschulter, MJ Daly (2008), "Estimation of the multiple testing burden for genomewide association studies of nearly all common variants", Genetic Epidemiology, to appear.

  51. F Pettersson, AP Morris, MR Barnes, LR Cardon (2008), "Goldsurfer2 (Gs2): A comprehensive tool for the analysis and visualization of genome wide association studies", BMC Bioinformatics, 9(1):138.

  52. Alkes L Price, Johannah Butler, Nick Patterson, Cristian Capelli, Vincenzo L Pascali, Francesca Scarnicci, Andres Ruiz-Linares, Leif Groop, Angelica A Saetta, Penelope Korkolopoulou, Uri Seligsohn, Alicja Waliszewska, Christine Schirmer, Kristin Ardlie, Alexis Ramos, James Nemesh, Lori Arbeitman, David B Goldstein, David Reich, Joel N Hirschhorn (2008), "Discerning the ancestry of European Americans in genetic association studies", PLoS Genetics, 4(1):e236.
    [ abstract]

  53. Alkes L Price, Michael E Weale, Nick Patterson, Simon R Myers, Anna C Need, Kevin V Shianna, Dongliang Ge, Jerome I Rotter, Esther Torres, Kent D Taylor, David B Goldstein, David Reich (2008), "Long-range LD can confound genome scans in admixed populations", American Journal of Human Genetics, 83(1):132-135.
    [ abstract]

  54. N Sarkar Roy, S Farheen, N Roy, S Sengupta and PP Majumder (2008), "Portability of tag SNPs across isolated population groups: an Example from India", Annals of Human Genetics, 72(1): 82-89.
    [ abstract]

  55. quantitative-trait
    M-H Roy-Gagnon, R A Mathias, M D Fallin, S H Jee, K W Broman and A F Wilson (2008), "An extension of the regression of offspring on mid-parent to test for association and estimate locus-specific heritability: the revised ROMP method", Annals of Human Genetics, 72(1): 115-125.
    [ abstract]

  56. Kathrin Saar, Alfred Beck, Marie-Thérèse Bihoreau, Ewan Birney, Denise Brocklebank, Yuan Chen, Edwin Cuppen, Stephanie Demonchy, Joaquin Dopazo, Paul Flicek, Mario Foglio, Asao Fujiyama, Ivo G Gut, Dominique Gauguier, Roderic Guigo, Victor Guryev, Matthias Heinig, Oliver Hummel, Niels Jahn, Sven Klages, Vladimir Kren, Michael Kube, Heiner Kuhl, Takashi Kuramoto, Yoko Kuroki, Doris Lechner, Young-Ae Lee, Nuria Lopez-Bigas, G Mark Lathrop, Tomoji Mashimo, Ignacio Medina, Richard Mott, Giannino Patone, Jeanne-Antide Perrier-Cornet, Matthias Platzer, Michal Pravenec, Richard Reinhardt, Yoshiyuki Sakaki, Markus Schilhabel, Herbert Schulz, Tadao Serikawa, Medya Shikhagaie, Shouji Tatsumoto, Stefan Taudien, Atsushi Toyoda, Birger Voigt, Diana Zelenika, Heike Zimdahl, Norbert Hubner (The STAR Consortium) (2008), "SNP and haplotype mapping for genetic analysis in the rat", Nature Genetics, 40:560-566.
    [ abstract]

  57. Sriram Sankararaman, Srinath Sridhar, Gad Kimmel, Eran Halperin (2008), "Estimating local ancestry in admixed populations", American Journal of Human Genetics, 82(2):290-303.
    [ abstract]

  58. Montgomery Slatkin (2008), "Linkage disequilibrium -- understanding the evolutionary past and mapping the medical future", Nature Reviews Genetics, to appear.

  59. Montgomery Slatkin (2008), "Genotype-specific recurrence risks as indicators of the genetic architecture of complex diseases", American Journal of Human Genetics, 83(1):120-126.
    [ abstract]

  60. Julia Stoyanovich, Itsik Pe'er (2008), "MutaGeneSys: estimating individual disease susceptibility based on genome-wide SNP array data", Bioinformatics, 24(3):440-442
    [abstract]

  61. Shuying Sun, Celia MT Greenwood, Radford M Neal (2008), "Haplotype inference using a Bayesian hidden Markov model", Genetic Epidemiology, 31(8):937-948.
    [ abstract]

  62. Fumihiko Takeuchi, Masakuni Serizawa, Norihiro Kato (2008), "HapMap coverage for SNPs in the Japanese population", Journal of Human Genetics, 53(1):96-99.
    [ abstract]

  63. Hemant K. Tiwari, Jill Barnholtz-Sloan, Nathan Wineinger, Miguel A. Padilla, Laura K. Vaughan, David B. Allison (2008), "Review and evaluation of methods correcting for population stratification with a focus on underlying statistical principles", Human Heredity, 66:67-86.
    [ abstract]

  64. Claudio Verzilli, Tina Shah, Juan P Casas, Juliet Chapman, Manjinder Sandhu, Sally L Debenham, Matthijs S Boekholdt, Kay Tee Khaw, Nicholas J Wareham, Richard Judson, Emelia J Benjamin, Sekar Kathiresan, Martin G Larson, Jian Rong, Reecha Sofat, Steve E Humphries, Liam Smeeth, Gianpiero Cavalleri, John C Whittaker, Aroon D Hingorani (2008), "Bayesian meta-analysis of genetic association studies with different sets of markers " American Journal of Human Genetics, 82(4):859-872.
    [ abstract]

  65. Sandra Waaijenborg, Philip C. Verselewel de Witt Hamer, Aeilko H. Zwinderman (2008), "Quantifying the association between gene expressions and DNA-markers by penalized canonical correlation analysis", Statistical Applications in Genetics and Molecular Biology, 7:3.
    [abstract]

  66. Jian Wang, Sanjay Shete (2008), "A test for genetic association that incorporates information about deviation from Hardy-Weinberg proportions in cases", American Journal of Human Genetics, 83(1):53-63.
    [ abstract]

  67. Kai Wang, Diana Abbott (2008), "A principal components regression approach to multilocus genetic association studies", Genetic Epidemiology, 32(2):108-118.
    [ abstract]

  68. Xiaoquan Wen, Dan L. Nicolae (2008), "Association studies for untyped markers with TUNA", Bioinformatics, 24(3):435-437.
    [abstract]

  69. Shuhua Xu, Wei Huang, Ji Qian, Li Jin (2008), "Analysis of genomic admixture in Uyghur and its implication in mapping strategy", American Journal of Human Genetics, 82(4):883-894.
    [ abstract]

  70. LK Yan, G Zheng, Z Li (2008), "Two-Stage Group Sequential Robust Tests in Family-Based Association Studies: Controlling Type I Error", Annals of Human Genetics, to appear.

  71. Hsin-Chou Yang, Hsin-Yi Hsieh, Cathy S. J. Fann (2008), "Kernel-based association test", Genetics, 179:1057-1068.
    [abstract]

  72. Dmitri V Zaykin, Kyoko Shibata (2008), "Genetic flip-flop without an accompanying change in linkage disequilibrium" (letters to the editor), American Journal of Human Genetics, 82(3):794-796.
    [ abstract]

  73. Wei Zhang, M. Eileen Dolan (2008), "On the challenges of the HapMap resource", Bioinformation, 2(6):238-239.
    [html]

  74. G Zheng (2008), "Analysis of ordered categorical data: two score-independent approaches", Biometrics, to appear.

  75. G Zheng, M Meyer, W Li, Y Yang (2008) "Comparison of two-phase analyses for case-control genetic association studies", Statistics in Medicine, to appear.

  76. X Zhu, S Li, RS Cooper, RC Elston (2008), "A unified association analysis approach for family and unrelated samples correcting for stratification", American Journal of Human Genetics, 82(2):352-365.
    [ abstract] [PDF]