Bibliography:
Linkage Disequilibrium Analysis
(2008)
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+ 2008

  1. J Ahn, U Peters, D Albanes, MP Purdue, CC Abnet, N Chatterjee, RL Horst, BW Hollis, WY Huang, JM Shikany, RB Hayes, (Prostate, Lung, Colorectal, and Ovarian Cancer Screening Trial Project Team) (2008), "Serum vitamin D concentration and prostate cancer risk: a nested case-control study", Journal of National Cancer Institute, 100(11):796-804.

  2. Andrew S. Allen, Glen A. Satten (2008), "Robust estimation and testing of haplotype effects in case-control studies", Genetic Epidemiology, 32(1):29-40.
    [ abstract]

  3. NC Allen, S Bagade, MB McQueen, JP Ioannidis, FK Kavvoura, MJ Khoury, RE Tanzi, L Bertram (2008), "Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database", Nature Genetics, 40(7):827-834.

  4. Carl A Anderson, Fredrik H Pettersson, Jeffrey C Barrett, Joanna J Zhuang, Jiannis Ragoussis, Lon R Cardon, Andrew P Morris (2008), "Evaluating the effects of imputation on the power, coverage, and cost efficiency of genome-wide SNP platforms", American Journal of Human Genetics, 83(1):112-119.
    [ abstract]

  5. RJ Anney, E Kenny, CT O'Dushlaine, J Lasky-Su, B Franke, DW Morris, BM Neale, P Asherson, SV Faraone, M Gill (2008), "Non-random error in genotype calling procedures: implications for family-based and case-control genome-wide association studies", American Journal of Medical Geneics, 147B(8):1379-1386.

  6. Guillaume Assié, Thomas LaFramboise, Petra Platzer, Jérôme Bertherat, Constantine A Stratakis, Charis Eng (2008), "SNP arrays in heterogeneous tissue: highly accurate collection of both germline and somatic genetic information from unpaired single tumor samples", American Journal of Human Genetics, 82(4):903-915.
    [ abstract]

  7. Silviu-Alin Bacanu, Matthew R. Nelson, Margaret G. Ehm (2008), "Comparison of association methods for dense marker data", Genetic Epidemiology, to appear.
    [ abstract]

  8. Vikas Bansal, Aaron L. Halpern, Nelson Axelrod, Vineet Bafna (2008), "An MCMC algorithm for haplotype assembly from whole-genome sequence data", Genome Research, 18(8):1336-1346.
    [abstract]

  9. Luis B Barreiro, Guillaume Laval, Hélène Quach, Etienne Patin, Lluís Quintana-Murci (2008), "Natural selection has driven population differentiation in modern humans", Nature Genetics, 40:340-345.
    [ abstract]

  10. J Benn-Torres, C Bonilla, C M Robbins, L Waterman, T Y Moses, W Hernandez, E R Santos, F Bennett, W Aiken, T Tullock, K Coard, A Hennis, S Wu, B Nemesure, M C Leske, V Freeman, J Carpten and R A Kittles (2008), "Admixture and population stratification in African Caribbean populations", Annals of Human Genetics, 72(1): 90-98.
    [ abstract]

  11. Sivan Bercovici, Dan Geiger, Liran Shlush, Karl Skorecki, Alan Templeton (2008), "Panel construction for mapping in admixed populations via expected mutual information", Genome Research, 18:661-667.
    [abstract]

  12. Walter Bodmer, Carolina Bonilla (2008), "Common and rare variants in multifactorial susceptibility to common diseases", Nature Genetics, 40:695-701.
    [abstract]

  13. N Bonifaci, A Berenguer, J Díez, O Reina, I Medina, J Dopazo, V Moreno, MA Pujana (2008) "Biological processes, properties and molecular wiring diagrams of candidate low-penetrance breast cancer susceptibility genes", BMC Medical Genomics, 1:62.

  14. SR Browning (2008), "Estimation of pairwise identity by descent from dense genetic marker data in a population sample of haplotypes", Genetics, 178:2123-2132.

  15. Sharon R Browning (2008), "Missing data imputation and haplotype phase inference for genome-wide association studies", Human Genetics, 124(5):439-450.

  16. BL Browning, SR Browning (2008), "Haplotypic analysis of Wellcome Trust Case Control Consortium data", Human Genetics, 123:273-280.

  17. Kim W Carter, Pamela A McCaskie, Lyle J Palmer (2008), "SimHap GUI: An intuitive graphical user interface for genetic association analysis", BMC Bioinformatics, 9:557
    [abstract]

  18. M Chadeau-Hyam, CJ Hoggart, PF O'Reilly, JC Whittaker, M De Iorio, DJ Balding (2008), "Fregene: simulation of realistic sequence-level data in populations and ascertained samples", BMC Bioinformatics, 9:364.
    [abstract]

  19. MH Chang, ML Lindegren, MA Butler, SJ Chanock, NF Dowling, M Gallagher, R Moonesinghe, CA Moore, RM Ned, MR Reichler, CL Sanders, R Welch, A Yesupriya, MJ Khoury, for the CDC/NCI NHANES III Genomics Working Group (2008), "Prevalence in the United States of selected candidate gene variants: third national health and nutrition examination survey, 1991-1994. American Journal of Epidemiology, to appear.

  20. Juliet Chapman, John Whittaker (2008), "Analysis of multiple SNPs in a candidate gene or region", Genetic Epidemiology, 32(6):560-566.
    [ abstract]

  21. Daniel I. Chasman (2008), "On the utility of gene set methods in genomewide association studies of quantitative traits", Genetic Epidemiology, 32(7):658-668.
    [ abstract]

  22. Lina Chen, Liangcai Zhang, Yan Zhao, Liangde Xu, Yukui Shang, Qian Wang, Wan Li, Hong Wang, Xia Li (2009), "Prioritizing risk pathways: a novel association approach to searching for disease pathways fusing SNPs and pathways", Bioinformatics, 25(2):237-242.
    [abstract]

  23. Rong Chen, Alex A Morgan, Joel Dudley, Tarangini Deshpande, Li Li, Keiichi Kodama, Annie P Chiang, Atul J Butte (2008), "FitSNPs: highly differentially expressed genes are more likely to have variants associated with disease", Genome Biology, 9:R170.

  24. Yi-Hau Chen, Nilanjan Chatterjee, Raymond J. Carroll (2008), "Retrospective analysis of haplotype-based case-control studies under a flexible model for gene-environment association", Biostatistics, 9(1):81-99.
    [abstract]

  25. Yi-Hau Chen, Hui-Wen Lin (2008), "Simple association analysis combining data from trios/sibships and unrelated controls", Genetic Epidemiology, 32(6):520-527.
    [ abstract]

  26. Yi-Hau Chen, Hui-Wen Lin, Huimei Liu (2008), "Two-stage analysis for gene-environment interaction utilizing both case-only and family-based analysis", Genetic Epidemiology, to appear.
    [ abstract]

  27. Zhixiang Chen, Bin Fu, Robert Schweller, Boting Yang, Zhiyu Zhao, Binhai Zhu (2008), "Linear time probabilistic algorithms for the singular haplotype reconstruction problem from SNP fragments", Proceedings of the 6th Asia-Pacific Bioinformatics Conference eds. A Brazma, S Miyano, T Akutsu, pp.333-342 (Imperial College Press).

  28. Yen-Feng Chiu, Kung-Yee Liang, Lee-Ming Chuang, Terri H Beaty (2008), "Incorporation of covariates into multipoint linkage disequilibrium mapping in case-control studies", Genetic Epidemiology, 32(2):143-151.
    [ abstract]

  29. TDT
    Ren-Hua Chung, Silke Schmidt, Eden R Martin, Elizabeth R Hauser (2008), "Ordered-subset analysis (OSA) for family-based association mapping of complex traits", Genetic Epidemiology, 32(7):627-637.
    [ abstract]

  30. Richard S. Cooper, Bamidele Tayo, Xiaofeng Zhu (2008) "Genome-wide association studies: implications for multiethnic samples", Human Molecular Genetics, 17:R151-R155.
    [abstract]

  31. Jukka Corander, Pekka Marttinen, Jukka Sirén, Jing Tang (2008), "Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations", BMC Bioinformatics, 9:539
    [abstract]

  32. LA Cupples (2008), "Family study designs in the age of genome-wide association studies: experience from the Framingham Heart Study", Current Opinion in Lipidology, 19(2):144-150.
    [abstract]

  33. Paul IW de Bakker, Manuel AR Ferreira, Xiaoming Jia, Benjamin M Neale, Soumya Raychaudhuri, and Benjamin F Voight (2008) "Practical aspects of imputation-driven meta-analysis of genome-wide association studies", Human Molecular Genetics, 17:R122-R128.
    [abstract]

  34. Olivier Delaneau, Cédric Coulonges, Jean-François Zagury (2008), "Shape-IT: new rapid and accurate algorithm for haplotype inference", BMC Bioinformatics, 9:540
    [abstract]

  35. TDT
    Jie Ding, Shili Lin (2008), "XMCPDT does have correct type I error rates" (letters to the editor), American Journal of Human Genetics, 82(2):528-530.
    [ abstract]

  36. Zhihong Ding, Thomas Mailund, Yun S. Song (2008), "Efficient whole-genome association mapping using local phylogenies for unphased genotype data", Bioinformatics, 24(19):2215-2221.
    [abstract]

  37. P Donnelly (2008), "Progress and challenges in genome-wide association studies in humans", Nature, 456(7223):728-731.

  38. Frank Dudbridge (2008), "Likelihood-based association analysis for nuclear families and unrelated subjects with missing genotype data", Human Heredity, 66:87-98.
    [ abstract]

  39. Frank Dudbridge, Arief Gusnanto (2008), "Estimation of significance thresholds for genomewide association scans", Genetic Epidemiology, 32(3):227-234.
    [ abstract]

  40. Douglas F. Easton and Rosalind A. Eeles (2008), "Genome-wide association studies in cancer", Human Molecular Genetics, 17:R109-R115.
    [abstract]

  41. AO Edwards, BL Fridley, KM James, AK Sharma, JM Cunningham, N Tosakulwong (2008), "Evaluation of clustering and genotype distribution for replication in genome wide association studies: the age-related eye disease study", PLoS ONE , 3:e3813.

  42. B Eldon, J Wakeley (2008), "Linkage disequilibrium under skewed offspring distribution among individuals in a population", Genetics, 178(3):1517-1532.

  43. DM Evans, JC Barrett, LR Cardon (2008), "To what extent do scans of non-synonymous SNPs complement denser genome-wide association studies?", European Journal of Human Genetics, to appear.

  44. Brooke L. Fridley (2008), "Bayesian variable and model selection methods for genetic association studies", Genetic Epidemiology, to appear.
    [ abstract]

  45. BL Fridley, ST Turner, A Chapman, A Rodin, E Boerwinkle, K Bailey (2008), "Reproducibility of genotypes as measured by the Affymetrix GeneChip(R) 100K human mapping array set", Computational Statistics and Data Analysis, 52(12):5367-5374.

  46. Xiaoyi Gao, Joshua Starmer, Eden R. Martin (2008), "A multiple testing correction method for genetic association studies using correlated single nucleotide polymorphisms", Genetic Epidemiology, 32(4):361-369.
    [ abstract]

  47. Arpita Ghosh, Fei Zou, Fred A Wright (2008), "Estimating odds ratios in genome scans: an approximate conditional likelihood approach", American Journal of Human Genetics, 82(5):1064-1074.
    [ abstract]

  48. Eleni Giannoulatou, Christopher Yau, Stefano Colella, Jiannis Ragoussis, Christopher C Holmes (2008), "GenoSNP: a variational Bayes within-sample SNP genotyping algorithm that does not require a reference population", Bioinformatics, 24(19):2209-2214.
    [abstract]

  49. JR González, JL Carrasco, F Dudbridge, L Armengol, X Estivill, V Moreno (2008), "Maximizing association statistics over genetic models", Genetic Epidemiology, 32(3):246-254
    [ abstract]

  50. IP Gorlov, OY Gorlova, SR Sunyaev, MR Splitz, CI Amos (2008), "Shifting paradigm of association studies: value of rare single-nucleotide polymorphisms", American Journal of Human Genetics, 82(1):100-112.
    [ abstract]

  51. S Greenland (2008), "Multiple comparisons and association selection in general epidemiology", International Journal of Epidemiology, 37(3):430-434.

  52. C Charles Gu, K Yu, S Ketkar, Alan R Templeton, DC Rao (2008), "On transferability of genome-wide tagSNPs", Genetic Epidemiology, 32(2):89-97.
    [ abstract]

  53. Y Guan, M Stephens (2008), "Practical issues in imputation-based association mapping", PLoS Genetics, 4:1000279.

  54. Chao-Yu Guo, Kathryn L Lunetta, Anita L DeStefano, L Adrienne Cupples (2008), "Combined haplotype relative risk (CHRR): a general and simple genetic association test that combines trios and unrelated case-controls", Genetic Epidemiology, to appear.
    [ abstract]

  55. Ingileif B Hallgrímsdóttir, Debbie S Yuster (2008), "A complete classification of epistatic two-locus models", BMC Genetics, 9:17.
    [ abstract]

  56. RL Hanson and WC Knowler (2008), "Design and analysis of genetic association studies to finely map a locus identified by linkage analysis: assessment of the extent to which an association can account for the linkage", Annals of Human Genetics, 72(1):126-139.
    [ abstract]

  57. Simon C Heath, Ivo G Gut, Paul Brennan, James D McKay, Vladimir Bencko, Eleonora Fabianova, Lenka Foretova, Michael Georges, Vladimir Janout, Michael Kabesch, Hans E Krokan, Maiken B Elvestad, Jolanta Lissowska, Dana Mates, Peter Rudnai, Frank Skorpen, Stefan Schreiber, José M Soria, Ann-Christine Syvänen, Pierre Meneton, Serge Herçberg, Pilar Galan, Neonilia Szeszenia-Dabrowska, David Zaridze, Emmanuel Génin, Lon R Cardon, Mark Lathrop, (2008), "Investigation of the fine structure of European populations with applications to disease association studies", European Journal of Human Genetics, 16:1413-1429.
    [ abstract]

  58. Rebecca Hein, Lars Beckmann, Jenny Chang-Claude (2008), "Sample size requirements for indirect association studies of gene-environment interactions (G × E) ", Genetic Epidemiology, 32(3):235-245.
    [ abstract]

  59. Clive J Hoggart, Taane G Clark, Maria De Iorio, John C Whittaker, David J Balding (2008), "Genome-wide significance for dense SNP and resequencing data", Genetic Epidemiology, 32(2):179-185.
    [ abstract]

  60. CJ Hoggart, JC Whittaker, M De Iorio, DJ Balding (2008), "Simultaneous analysis of all SNPs in genome-wide and re-sequencing association studies", PLoS Genetics, 4:e1000130.

  61. Marit Holden, Shiwei Deng, Leszek Wojnowski, Bettina Kulle (2008), "GSEA-SNP: applying gene set enrichment analysis to SNP data from genome-wide association studies", Bioinformatics, 24(23):2784-2785
    [abstract]

  62. Fay J Hosking, Jonathan A C Sterne, George Davey Smith, Peter J Green (2008) "Inference from genome-wide association studies using a novel Markov model", Genetic Epidemiology, 32(6):497-504.
    [ abstract]

  63. Janna E Hutz, Aldi T Kraja, Howard L McLeod,, Michael A Province (2008), "CANDID: a flexible method for prioritizing candidate genes for complex human traits", Genetic Epidemiology, to appear.
    [ abstract]

  64. Robert P Igo Jr, Jing Li, Katrina AB Goddard (2008), "Association mapping by generalized linear regression with density-based haplotype clustering", Genetic Epidemiology, to appear.
    [ abstract]

  65. Mark M Iles (2008), "Quantification and correction of bias in tagging SNPs caused by insufficient sample size and marker density by means of haplotype-dropping", Genetic Epidemiology, 32(1):20-28.
    [ abstract]

  66. JP Ioannidis (2008), "Why most discovered true associations are inflated", Epidemiology, 19(5):640-648.

  67. JP Ioannidis (2008), "Effect of formal statistical significance on the credibility of observational associations", American Journal of Epidemiology, 168(4):374-383.

  68. JP Ioannidis (2008), "Calibration of credibility of agnostic genome-wide associations", American Journal of Medical Geneics, 147B(6):964-972.

  69. JP Ioannidis, P Boffetta, J Little, TR O'Brien, AG Uitterlinden, P Vineis, DJ Balding, A Chokkalingam, SM Dolan, WD Flanders, JP Higgins, MI McCarthy, DH McDermott, GP Page, TR Rebbeck, D Seminara, MJ Khoury (2008), "Assessment of cumulative evidence on genetic associations: interim guidelines", International Journal of Epidemiology, 37(1):120-132.

  70. A Cecile JW Janssens, Marta Gwinn, Linda A Bradley, Ben A Oostra, Cornelia M van Duijn, Muin J Khoury (2008), "A critical appraisal of the scientific basis of commercial genomic profiles used to assess health risks and personalize health interventions", American Journal of Human Genetics, 82(3):593-599.
    [ abstract]

  71. A Cecile JW Janssens, Cornelia M van Duijn (2008), "Genome-based prediction of common diseases: advances and prospects", Human Molecular Genetics, 17:R166-R173.
    [abstract]

  72. Hui Jiang, Wing Hung Wong (2008), "SeqMap: mapping massive amount of oligonucleotides to the genome", Bioinformatics, 24(20):2395-2396.
    [abstract]

  73. Gudrun Jonasdottir, Tim Becker, Keith Humphreys, Juni Palmgren (2008), "Testing association in the presence of linkage using the GRE and multiple markers", Genetic Epidemiology, 32(5):425-433.
    [ abstract]

  74. DA Jones, J Wakeley (2008), "The influence of gene conversion on linkage disequilibrium around a selective sweep", Genetics, 180:1251-1259.

  75. quantitative-trait
    Jeesun Jung, Ming Zhong, Lian Liu, Ruzong Fan (2008), "Bivariate combined linkage and association mapping of quantitative trait loci", Genetic Epidemiology, 32(5):396-412.
    [ abstract]

  76. HM Kang, NA Zaitlen, CM Wade, A Kirby, D Heckerman, MJ Daly, E Eskin (2008), "Efficient control of population structure in model organism association mapping", Genetics, 178(3):1709-1723.

  77. Mamoru Kato, Yusuke Nakamura, Tatsuhiko Tsunoda (2008), "An algorithm for inferring complex haplotypes in a region of copy-number variation", American Journal of Human Genetics, 83(2):157-169.
    [ abstract]

  78. FK Kavvoura, JP Ioannidis (2008), "Methods for meta-analysis in genetic association studies: a review of their potential and pitfalls", Human Genetics, 123:1-14.

  79. FK Kavvoura, MB McQueen, MJ Khoury, RE Tanzi, L Bertram, JP Ioannidis (2008), "Evaluation of the potential excess of statistically significant findings in published genetic association studies: application to Alzheimer's disease", American Journal of Epidemiology, 168(8):855-865.

  80. Jane Kaye (2008), "The regulation of direct-to-consumer genetic tests", Human Molecular Genetics, 17:R180-R183.
    [abstract]

  81. MJ Khoury, R Valdez, A Albright (2008), "Public health genomics approach to type 2 diabetes", Diabetes, 57(11):2911-2914.

  82. MJ Khoury, S Wacholder (2008), "Invited commentary: from genome-wide association studies to gene-environment-wide interaction studies--challenges and opportunities", American Journal of Epidemiology, to appear.

  83. JM Kidd, Z Cheng, T Graves, B Fulton, RK Wilson, EE Eichler (2009), "Haplotype sorting using human fosmid clone end-sequence pairs", Genome Research, 18(12):2016-2023.

  84. Yunjung Kim (2008), Analysis of Multilocus Linkage Disequilibrium Structure in the Human Genome Ph.D Thesis, Program of Bioinformatics, North Carolina State University
    [PDF]

  85. Yunjung Kim, Sheng Feng, Zhao-Bang Zeng (2008), "Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains", Genetic Epidemiology, 32(4):301-312.
    [ abstract]

  86. Lambertus Klei, Diana Luca, B. Devlin, Kathryn Roeder (2008), "Pleiotropy and principal components of heritability combine to increase power for association analysis", Genetic Epidemiology, 32(1):9-19.
    [ abstract]

  87. K Knight, D Curtis, PC Sham (2008), "CLUMPHAP: a simple tool for performing haplotype-based association analysis", Genetic Epidemiology, 32(6):539-545.
    [ abstract]

  88. Dmitry A Konovalov, Dik Heg (2008), "Estimation of population allele frequencies from small samples containing multiple generations", Proceedings of the 6th Asia-Pacific Bioinformatics Conference eds. A Brazma, S Miyano, T Akutsu, pp.321-332 (Imperial College Press).

  89. Charles Kooperberg, Michael LeBlanc (2008), "Increasing the power of identifying gene × gene interactions in genome-wide association studies ", Genetic Epidemiology, 32(3):255-263.
    [ abstract]

  90. Leonid Kruglyak (2008), "The road to genome-wide association studies" (essay), Nature Reviews Genetics, 9:314-318.
    [abstract]

  91. B Kulle, A Frigessi, H Edvardsen, V Kristensen, L Wojnowski (2008), "Accounting for haplotype phase uncertainty in linkage disequilibrium estimation", Genetic Epidemiology, 32(2):168-178.
    [ abstract]

  92. Azra Kurbasic, Ola Hössjer (2008), "A general method for linkage disequilibrium correction for multipoint linkage and association", Genetic Epidemiology, 32(7):647-657.
    [ abstract]

  93. quantitative-trait
    Lydia Coulter Kwee, Dawei Liu, Xihong Lin, Debashis Ghosh, Michael P Epstein (2008), "A powerful and flexible multilocus association test for quantitative traits", American Journal of Human Genetics, 82(2):386-397.
    [ abstract]

  94. Niels Landwehr, Taneli Mielikäinen (2008), "Probabilistic logic learning from haplotype data", Lecture Notes in Computer Science, Vol 4911, pp.263-286.
    [ abstract]

  95. Jessica Lasky-Su, Helen N Lyon, Valur Emilsson, Iris M Heid, Cliona Molony, Benjamin A Raby, Ross Lazarus, Barbara Klanderman, Manuel E Soto-Quiros, Lydiana Avila, Edwin K Silverman, Gudmar Thorleifsson, Unnur Thorsteinsdottir, Florian Kronenberg, Caren Vollmert, Thomas Illig, Caroline S Fox, Daniel Levy, Nan Laird, Xiao Ding, Matt B McQueen, Johannah Butler, Kristin Ardlie, Constantina Papoutsakis, George Dedoussis, Christopher J O'Donnell, H-Erich Wichmann, Juan C Celedón, Eric Schadt, Joel Hirschhorn, Scott T Weiss, Kari Stefansson, Christoph Lange (2008), "On the replication of genetic associations: timing can be everything!", American Journal of Human Genetics, 82(4):849-858.
    [ abstract]

  96. S Lee, S Kasif, Z Weng, CR Cantor (2008), "Quantitative analysis of single nucleotide polymorphisms within copy number variation", PLoS ONE, 3(12):e3906.

  97. Seunggeun Lee, Patrick F Sullivan, Fei Zou, Fred A Wright (2008), "Comment on a simple and improved correction for population stratification" (letter to the editor), American Journal of Human Genetics, 82(2):524-526.
    [ abstract]

  98. Stephen Leslie, Peter Donnelly, Gil McVean (2008), "A statistical method for predicting classical HLA alleles from SNP data", American Journal of Human Genetics, 82(1):48-56.
    [ abstract]

  99. Guillaume Lettre and John D. Rioux (2008), "Autoimmune diseases: insights from genome-wide association studies", Human Molecular Genetics, 17:R116-R121.
    [abstract]

  100. Chun Li, Mingyao Li (2008), "GWAsimulator: a rapid whole-genome simulation program", Bioinformatics, 24:140-142.
    [abstract]

  101. Chun Li, Mingyao Li, Ji-Rong Long, Qiuyin Cai, Wei Zheng (2008), "Evaluating cost efficiency of SNP chips in genome-wide association studies", Genetic Epidemiology, 32(5):387-395.
    [ abstract]

  102. Jing Li (2008), "A novel strategy for detecting multiple loci in genome-wide association studies of complex diseases", International Journal of Bioinformatics Research and Applications, 4(2):150-163.
    [ abstract]

  103. Meijuan Li, Cavan Reilly, Timothy Hanson (2008), "A semiparametric test to detect associations between quantitative traits and candidate genes in structured populations", Bioinformatics, 24(20):2356-2362.
    [abstract]

  104. TDT
    MX Li, L Jiang, YQ Song, PC Sham (2008), "Power of transmission/disequilibrium tests in admixed populations", Genetic Epidemiology, 32(5):434-444.
    [ abstract]

  105. Mingyao Li, Chun Li (2008), "Assessing departure from Hardy-Weinberg equilibrium in the presence of disease association", Genetic Epidemiology, 32(7):589-599.
    [ abstract]

  106. Qizhai Li, Kai Yu (2008), "Improved correction for population stratification in genome-wide association studies by identifying hidden population structures", Genetic Epidemiology, 32(3):187-284.
    [ abstract]

  107. Q Li, K Yu, Z Li, G Zheng (2008), "MAX-rank: a simple and robust genome-wide scan for case-control association studies", Human Genetics, 123(6):617-623.
    [ abstract]

  108. Q Li, G Zheng, Z Li, K Yu (2008), "Efficient Approximation of P-value of the Maximum of Correlated Tests, with Applications to Genome-Wide Association Studies", Annals of Human Genetics, 72(3):397-406.

  109. Wentian Li (2008), "Three lectures on case-control genetic association analysis", Briefings in Bioinformatics, 9:1-13.
    [abstract]

  110. Wentian Li, Young Ju Suh, Yaning Yang (2008), "Exploring case-control genetic association tests using phase diagrams", Computational Biology and Chemistry, 32(6):391-399.
    [ abstract]

  111. Kuo-ching Liang, Xiaodong Wang (2008), "A deterministic sequential Monte Carlo method for haplotype inference", IEEE Journal of Selected Topics in Signal Processing, 2(3):322-331
    [ abstract]

  112. Haiyong Liao, Michael Ng, Eric Fung, Pak C Sham (2008), "Unidimensional nonnegative scaling for genome-wide Linkage Disequilibrium maps", International Journal of Bioinformatics Research and Applications, 4(4):417-434.
    [ abstract]

  113. DY Lin, Y Hu, BE Huang (2008), "Simple and efficient analysis of disease association with missing genotype data", American Journal of Human Genetics, 82(2):444-452.
    [ abstract]

  114. Wan-Yu Lin, Daniel J Schaid (2008), "Power comparisons between similarity-based multilocus association methods, logistic regression, and score tests for haplotypes", Genetic Epidemiology, to appear.
    [ abstract]

  115. Jianfeng Liu, Yufang Pei, Chris J. Papasian, Hong-Wen Deng (2008), "Bivariate association analyses for the mixture of continuous and binary traits with the use of extended generalized estimating equations", Genetic Epidemiology, to appear.
    [ abstract]

  116. Qingzhong Liu, Jack Yang, Zhongxue Chen, Mary Qu Yang, Andrew H Sung, Xudong Huang (2008), "Supervised learning-based tagSNP selection for genome-wide disease classifications", BMC Genomics, 9(suppl 1):S6.
    [abstract]

  117. Youfang Liu, Georgios Athanasiadis, Michael E. Weale (2008), "A survey of genetic simulation software for population and epidemiological studies", Human Genomics, 3(1):79-86.

  118. I Lobach, RJ Carroll, C Spinka, MH Gail, N Chatterjee (2008), "Haplotype-based regression analysis and inference of case-control studies with unphased genotypes and measurement errors in environmental exposures", Biometrics, 64(3):673-684.

  119. Diana Luca, Steven Ringquist, Lambertus Klei, Ann B Lee, Christian Gieger, H-Erich Wichmann, Stefan Schreiber, Michael Krawczak, Ying Lu, Alexis Styche, Bernie Devlin, Kathryn Roeder, Massimo Trucco (2008), "On the use of general control samples for genome-wide association studies: genetic matching highlights causal variants", American Journal of Human Genetics, 82(2):453-463.
    [ abstract]

  120. TDT
    Stuart Macgregor (2008), "Optimal two-stage testing for family-based genome-wide association studies" (letters to the editor), American Journal of Human Genetics, 82(3):797-799.
    [ abstract]

  121. B Maher (2008), "Personal genomes: the case of the missing heritability", Nature, 456:18-21.

  122. YV Marchenko, RJ Carroll, DY Lin, CI Amos CI (2008), "Semiparametric analysis of case-control genetic data in the presence of environmental factors", The Stata Journal, 8:305-333.

  123. Gaëlle Marenne, Cyril Dalmasso, Hervé Perdry, Emmanuelle Génin, Philippe Broët (2008), "Impaired performance of FDR-based strategies in whole-genome association studies when SNPs are excluded prior to the analysis", Genetic Epidemiology, to appear.
    [ abstract]

  124. AG Matthews, C Haynes, C Liu, J Ott (2008), "Collapsing SNP genotypes in case-control genome-wide association studies increases the type I error rate and power", Statistical Applications in Genetics and Molecular Biology, 7(1):23.

  125. Mark I McCarthy and Joel N Hirschhorn (2008), "Genome-wide association studies: past, present and future" (editorial), Human Molecular Genetics, 17:R100-R101.
    [abstract]

  126. Mark I McCarthy and Joel N Hirschhorn (2008), "Genome-wide association studies: potential next steps on a genetic journey", Human Molecular Genetics, 17:R156-R165.
    [abstract]

  127. MI McCarthy, GR Abecasis, LR Cardon, DB Goldstein, J Little, JP Ioannidis, JN Hirschhorn (2008), "Genome-wide association studies for complex traits: consensus, uncertainty and challenges", Nature Reviews Genetics, 9:356-369.
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  128. C Minelli, JR Thompson, KR Abrams, A Thakkinstian, J Attia (2008), "How should we use information about HWE in the meta-analyses of genetic association studies?", International Journal of Epidemiology, 37(1):136-146.

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