|
Completely Sequenced Genomes bacteria |
Eubacteria [superkindom]
a Ralstonia solanacearum page from the Nature magazine (2002) (plant pathogen)
a Salmonella enterica page from the Nature magazine (2001) (agent for human gastroenteritis)
a Mycobacterium leprae page from the Nature magazine (2001)
a Yersinia pestis page from the Nature magazine (2001) (agent of plague)
an Ureaplasma urealyticum page from the Nature magazine (2000) (mucosal pathogen)
a Vibrio cholerae page from the Nature magazine (2000) (pathogen for cholera)
a Buchnera page from the Nature magazine (2000) (half-way between an organelle and a free-living symbiont)
a Campylobacter jejuni page from the Nature magazine
(2000) (common cause of food poisoning)
a Xylella fastidiosa page from the Nature magazine
(2000) (pathogen of a plant disease)
a Neisseria meningitidis page from the Nature magazine
(2000) (pathogen of meningtis)
a Pseudomonas aeruginosa page from the Nature magazine
(2000) (a case study for drug resistence)
a Chlamydia pneumoniae page from the Nature magazine
(1999) (one agent causing pneumonia and bronchitis)
a Thermatoga maritima page from the Nature magazine
(1999) (a case study for metabolic process)
an Aquifex aeolicus page from the Nature magazine
(1998) (heat-resistent)
a Rickettsia prowazekii from the Nature magazine
(1998) (agent of typhus, and closest relative of mitochondria)
a Mycobacterium tuberculosis page from the Nature magazine (1998) (pathogen for TB)
a Bacillus subtilis page from the Nature magazine
(1997) (gram-positive)
a Helicobacter pylori page from the Nature magazine
(1997) (pathogen of stomach ulcers)
a Borrelia burgdorferi page from the Nature magazine
(1997) (pathogen of Lyme disease)
an Escherichia coli page from the Nature magazine (1997, 2001) (gut pathogen)
[ home]
(unlike the archaebacteria,eubacteria contain neuraminic acid in their cell walls. also they differ from archeabacteria in the composition of their tRNAs, rRNAs, and RNA polymerase)
| Year | Name | Strain | Size [Exact Length] | Publication [Submitted Date] | Predicted Genes [Confirmed] | Sequence [GenBank #] | Web |
|---|---|---|---|---|---|---|---|
| 2001 | Agrobacterium tumefaciens | C58-Cereon | 2.84 [2,841,581] |
Goodner et al., Science, 294(5550):2323-2328 (2001).
[oct01] | Predicted Genes [confirmed] | [NC_003063] | web |
| 2001 | - | C58-UWash | 2.84 [2,841,490] |
Wood et al., Science, 294(5550):2317-2323 (2001).
[sep01] | Predicted Genes [confirmed] | [NC_003304] | web |
| 1998 | Aquifex aeolicus | VF5 | 1.55 Mb [1,551,335] | Deckert, et al. Nature, 392:353-358 (1998) [July97,March98] | 1512?1522? [?] | ? [NC_000918] |
Diversa ,
TIGR [usa] |
| 2000 | Bacillus halodurans | C-125 | 4.2 Mb [4,202,353] | Takami et al. NAR, 28(21):4317-4331 (2000)
[date] | 4066 [confirmed] | [NC_002570] | TIGR [usa] |
| 1997 | Bacillus subtilis | 168 | 4.2Mb [4,214,814] | Kunst, et al. Nature, 390:249-256 (1997) [Nov97] | 4100?
[?] | Pasteur
[NC_000964] |
Lyon [france] Pasteur [france] , TIGR [usa] |
| 2002 | Bifidobacterium longum | NCC2705 | 2.26 Mb [2,256,646] |
Schell et al. submitted
[date] | Predicted Genes [confirmed] | [NC_004307] | web |
| ? | Bordetella pertussis | . | 3.88 Mb | ? [?] | ? [?] | ? [?] | Sanger [uk] |
| 1997 | Borrelia burgdorferi | B31 | 0.9 Mb [910,724] 1 | Fraser et al. Nature, 390:580-586 (1997) [Dec97] | 855? [581?] | TIGR
[NC_000949] |
TIGR BNL |
| 2002 | Bradyrhizobium japonicum | . | 9.1 Mb [9,105,828] |
Kaneko et al. DNA Research, 9(6):189-197 (2002).
[date] | Predicted Genes [confirmed] | [NC_004463] | Kazusa [japan] |
| 2002 | Brucella melitensis | 16M | size [2,117,144 for chI, 1,177,787 for chII] |
DelVecchio et al., PNAS, 99(1):443-448 (2002).
[nov01] | Predicted Genes [confirmed] | [NC_003317] [NC_003318] | web |
| 2000 | Buchnera | sp. APS | 0.64Mb [640,680] |
Shigenobu et al., Nature, 407(6800):81-86 (2000).
[date] | Predicted Genes [confirmed] | [NC_002528] | web |
| 2002 | Buchnera aphidicola | str. Sg (Schizaphis graminum) | 0.64Mb [641,454] |
Tamas et al., Science, 296(5577):2376-2379 (2002)
[jul02] | Predicted Genes [confirmed] | [NC_004061] | web |
| 2000 | Campylobacter jejuni | NCTC 11168 | 1.6 Mb [1,641,480] |
Parkhill et al. Nature, 403:665-668 (2000) [ Feb00] | 1654? [?] |
sanger [NC_002163] |
Sanger [uk] QueensMary [uk] |
| 2001 | Caulobacter crescentus | . | 4.0 Mb [4,016,947] |
Nierman et al., PNAS, 98:4136-4141 (2001) [oct01] | ? [?] | [NC_002696] | TIGR |
| 2000 | Chlamydia muridarum | . | 1 Mb [1,069,411] | Read et al, NAR, 28(6):1397-1406 (2000)
[oct01] | ? [?] | [NC_002620] | web |
| 1998 | Chlamydia trachomatis | serovar D | 1 Mb [1,042,519] | Stephens, et al, Science,282:754-759 (1998)
[May98] | 894? [?] |
Berkeley
[NC_000117] |
Berkeley, Stanford , TIGR [usa] |
| year | - | MoPn Nigg | [1,069,412] | Read et al, NAR, 28(6):1397-1406 (2000)
[date] | Predicted Genes [confirmed] | [genebank] | web |
| 2003 | Chlamydophila caviae (formerly Chlamydia psittaci, | 1.17Mb [1,173,390] | Read et al. (2003), Nucl Acids Res. 31:2134-2147.
| 1009? [?] | |||
| 1999 | Chlamydophila pneumoniae | CWL029 | 1.23Mb [1,230,230] | Kalman, et al, Nature Genetics, 21:385-389 (1999)
[Dec98] | 1052? [?] | Berkeley
[NC_000922] |
Berkeley, TIGR [usa] |
| 2000 | - | AR39 | 1.23 Mb [1,229,853] | Read et al. NAR, 28(6):1397-1406 (2000)
[nov01] | Predicted Genes [confirmed] | [NC_002179] | TIGR [usa] |
| 2000 | - | J138 | 1.23MB [1,226,565] | Shirai et al, NAR, 28(12):2311-2314 (2000)
[oct01] | Predicted Genes [confirmed] | [NC_002491] | TIGR [usa] |
| 2002 | Chlorobium tepidum | TLS | 2.15 Mb [2,154,946] |
Eisen et al., PNAS, ?:?-? (2002) [jul02] | ? [?] | [NC_002932] | TIGR |
| 2001 | Clostridium acetobutylicum | ATCC824D | 3.94 Mb [3,940,880] |
Nolling et al., J. Bacteriol, 183(16):4823-4838 (2001). [oct01] | 4018? [?] | [NC_003030] | GTC |
| 2002 | Clostridium perfringens | 13 | 3 MB [3,031,430] | ref
Shimizu et al., PNAS, 99(2):996-1001 (2002). [dec01] | Predicted Genes [confirmed] | [NC_003366] | web |
| 2002-03 | Corynebacterium efficiens | YS-314 | 3.1 Mb [3,147,090] |
Kawarabayasi et al. unpublished
[date] | Predicted Genes [confirmed] | [NC_004369] | web |
| 2001 | Corynebacterium glutamicum | - | 3.3 MB [3,309,400] |
Krubasik et al., Euro J Biochem, 286(13):3702-3708 (2001)
[mar01] | Predicted Genes [confirmed] | [NC_003450] | web |
| 1999 | Deinococcus radiodurans | R1 | 3.28 Mb [2,648,638] (c1) [412,348] (c2) [177,466] (megaplasma) [45,704] (plasmid) |
White, et al. Science, 286:665-668 (1999) | ? [?] | ? [NC_001263, NC_001264] | TIGR |
| 1997 | Escherichia coli | K12, MG1655 | 4.6Mb [4,639,221] |
Blattner, et al. Science, 277:1453-1462 (sept 5, 1997). [] | 4289? [?] |
Wisc [NC_000913] |
Wisc NIG [japan] EcoCyc Pasteur [france] |
| 2001 | - | O157:H7 EDL933 | 5.53 Mb [5,528,445] |
Perna et al., Nature, 409(6819):529-533 (2001).
[oct01] | Predicted Genes [confirmed] | [NC_002655] | web |
| 1999 | - | O157:H7 Sakai | 5.5 Mb [5,498,450] |
Makino et al.,
Genes Genet. Syst. 74(5):227-239 (1999).
[date] | Predicted Genes [confirmed] | [NC_002695] | web |
| 2002 | Fusobacterium nucleatum | ATCC 25586 | 2.17 Mb [2,174,500] |
Kapatral et al., J. Bacteriol. 184(7):2005-2018 (2002).
[apr02] | Predicted Genes [confirmed] | [NC_003454] | web |
| 2003 | Gloeobacter violaceus | PCC 7421 | size [exact] | ref
[date] | Predicted Genes [confirmed] | sequence [genebank] | Kazusa [japan] |
| 1995 | Haemophilus influenzae Rd | KW20 | 1.83 Mb [1,830,138]1 |
Fleischmann, et al. Science, 269:496-512 (1995). [July95,Sep97,May98] | 1709?1738?1743? [1473?] | TIGR
[NC_000907] | TIGR |
| 1997 | Helicobacter pylori | 26695 | 1.66 Mb [1,667,867]1 | Tomb, et al. Nature, 388:539-547 (1997). [PDF], [Aug97] | 1566?1588?1590? [895+290?] | TIGR
[NC_000915] | TIGR |
| 1999 | - | J99 | 1.64 Mb [1,643,831] | Alm et al. Nature, 397:176-180 (1999). [Jan99] | 1495? [874+275?] |
Astra
[NC_000921] | Astra |
| 2001 | Lactococcus lactis | IL1403 | 2.4 Mb [2,365,589 ] | Bolotin et al, Genome Res, 11:731-753 (2001) [oct01] | ? [?] | [NC_002662] | . |
| 2002-03 | Leptospira interrogans | serovar lai str. 56601 | 4.3 Mb [4,332,241] |
Ren et al.,
[date] | Predicted Genes [confirmed] | [NC_004342] | CNGCS [china] |
| 2001 | Listeria innocua | CLIP 11262 | 3 Mb [3,011,208] |
Glaser et al., Science, 294(5543):849-852 (2001).
[Oct01] | Predicted Genes [confirmed] | [NC_003212] |
TIGR [usa] , Pasteur [france] |
| 2001 | Listeria monocytogenes | EGD-e | size [exact] |
Glaser et al., Science, 294(5543):849-852 (2001).
[date] | Predicted Genes [confirmed] | [NC_003210] | TIGR [usa] |
| 2000 | Mesorhizobium loti | MAFF303099 | 7 Mb [7,036,074] | ref
[sep01] | Predicted Genes [confirmed] | [NC_002678] | web |
| 2001 | Mycobacterium leprae | . | 3.3 Mb [3,268,203] | Cole et al. Nature, 409(6823):1007-1011 (2001) | Predicted Genes [confirmed] |
Sanger [NC_002677] |
Sanger [uk] , TIGR [usa] , Pasteur [france] |
| 1998 | Mycobacterium tuberculosis | H37Rv | 4.4 Mb [4,411,529] | Cole, et al. Nature, 393:537-598 (1998) ( full text (html)) [June98] | 3918? 3924? [?] |
Sanger
[NC_000962] |
TIGR [usa] , Sanger [uk] , Pasteur [france] |
| 2001 | - | CDC 1551 | 4.4 Mb [4,403,836] | ref
[date] | Predicted Genes [confirmed] | [NC_002755] | TIGR [usa] |
| 1995 | Mycoplasma genitalium | G-37 | 0.58 Mb [580,074] | Fraser, et al. Science, 270:397-403 (1995). [Oct95] | 470?480? [?] |
TIGR
[NC_000908] | TIGR |
| 2002 | Mycoplasma penetrans | . | 1.3 Mb [1,358,633] |
Sasaki et al., NAR, 30:5293-5300 (2002)
[date] | Predicted Genes [confirmed] | sequence [NC_004432] | web |
| 1996 | Mycoplasma pneumoniae | M129 | 0.81 Mb [816,394] | Himmelreich, et al. NAR,24:4420-4449 (1996) | 677? [?] | ? [NC_000912] | Heidelberg |
| 2001 | Mycoplasma pulmonis | . | 0.96 Mb [963,879] |
Chambaud et al., NAR, 29(10):2145-2153 (2001)
[oct01] | Predicted Genes [confirmed] | [NC_002771] | Pasteur [france] |
| ? | Neisseria gonorrhoeae | . | 2.2 Mb [?] | ? [?] | ? [?] | ? [?] | Oklahoma |
| 2000 | Neisseria meningtidis | MC58 (serogroup B) | 2.2 Mb [2,272,351] | Tettelin et al, Science,
287:1809-1820 (2000) [?] | 2158? 2230? [?] | ? [NC_003112] | Sanger [uk] |
| 2000 | - | Z2491 (serogroup A) | 2.18 Mb [2,184,406] |
Parkhill et al., Nature, 404(6777):502-506 (2000)
[date] | Predicted Genes [confirmed] | [NC_003116] | web |
| 2001 | Nostoc | sp. PCC7120 | 6.4 Mb [6,413,771] |
Kaneko et al., DNA Res. 8(5):205-213 (2001).
[nov01] | Predicted Genes [confirmed] | [NC_003272] | web |
| 2002-03 | Oceanobacillus iheyensis | . | 3.6 Mb [3,630,528] |
Takami, et al., NAR, 30(18):3927-3935 (2002).
[date] | Predicted Genes [confirmed] | [NC_004193] | web |
| 2001 | Pasteurella multocida | Pm70 | 2.26 Mb [2,257,487] |
May et al., PNAS, 98(6):3460-3465 (2001)
[date] | Predicted Genes [confirmed] | [NC_002663] | web |
| 2000 | Pseudomonas aeruginosa | PAO1 | 6.26 Mb [6,264,403] |
Stover et al., Nature, 406(6799):959-964 (2000)
[date] | Predicted Genes [confirmed] | [NC_002516] | web |
| 2002 | Pseudomonas putida | KT2440 | 6.2 Mb [6,181,863] |
Nelson et al., Environ. Microbiol. 4(12):799-808.
[date] | Predicted Genes [confirmed] | [NC_002947] | web |
| 2002 | Ralstonia solanacearum | GMI1000 | size [3,716,413] |
[date] | Predicted Genes [confirmed] | [NC_003295] | web |
| ? | Rhodobacter capsulatus | . | 4.0 Mb | ? [?] | ? [?] | ? [?] | Chicago |
| 2001 | Rickettsia conorii | Malish 7 | 1.27 Mb [1,268,755] | Ogata et al., Science, 290(5490):347-350 (2000).
[oct01] | Predicted Genes [confirmed] | [NC_003103] | web |
| 1998 | Rickettsia prowazekii | Madrid E | 1.1 Mb (1,111,523) | Andersson, et al, Nature, 396:133-140(1998). [PDF] [Nov98] | 834? [?] |
EBI [NC_000963] | Uppsala |
| 2001 | Salmonella typhi | CT18 | 4.8 Mb [4,809,037] |
Parkhill et al., Nature, 413(6858):848-852 (2001).
[nov01] | Predicted Genes [confirmed] | [NC_003198] | web |
| 2001 | Salmonella typhimurium | LT2, SGSC1412 | 4.8 Mb [4,857,432] |
McClelland et al., Nature, 413(6858):852-856 (2001).
[nov01] | Predicted Genes [confirmed] | [NC_003197] | web |
| 2002 | Shewanella oneidensis | MR-1 | size [exact] |
Heidelberg, et al., Nature Biotechology, 99:?-?.
[date] | Predicted Genes [confirmed] | [NC_004347] | web |
| 2002 | Shigella flexneri | 2a str. 301 | size [exact] |
Jin et al. (2002), NAR, 30(20):?-?.
[date] | Predicted Genes [confirmed] | [NC_004337] | web |
| 2001 | Sinorhizobium meliloti | 1021 | 3.65 Mb [3,654,135] | Capela et al., PNAS, 98(17):9877-9882 (2001).
[oct01] | Predicted Genes [confirmed] | [NC_003047] | web |
| 2002 | Staphylococcus aureus | MW2 | 2.8 Mb [2,820,462] |
Baba et al., Lancet, 359:1819-1827 (2002)
[date] | Predicted Genes [confirmed] | [NC_003923] | TIGR [usa] |
| 2003 | Staphylococcus epidermidis | ATCC 12228 | 2.5 Mb [2,499,279] | Zhang et al. unpublished
[date] | Predicted Genes [confirmed] | [NC_004461] | web |
| 2001 | - | N315 | 2.8 Mb [2,813,641] |
Kuroda et al, Lancet, 357(9264):1225-1240 (2001)
[date] | Predicted Genes [confirmed] | [NC_002745] | web |
| 2001 | - | Mu50 | 2.88 Mb [2,878,040] |
Kuroda et al, Lancet, 357(9264):1225-1240 (2001)
[oct01] | Predicted Genes [confirmed] | [NC_002758] | TIGR [usa] |
| 2002 | Streptococcus agalactiae | 2603V/R | 2.1 Mb [2,160,267] |
Tettelin et al. (2002), PNAS, 99(19):12391-12396.
[date] | Predicted Genes [confirmed] | [NC_004116] | web |
| 2002 | - | NEM316 | 2.2 Mb [2,211,485] |
Glaser et al., (2002), Mol. Microbiol.
45(6):1499-1513.
[date] | Predicted Genes [confirmed] | [NC_004368] | web |
| 2002 | Streptococcus mutans | UA159 | size [exact] |
Ajdic et al. (2002), PNAS, 99(22):14434-14439.
[date] | Predicted Genes [confirmed] | [NC_004350] | web |
| 2001 | Streptococcus pneumoniae | TIGR4 | 2.2 Mb [2,160,837] |
Tettelin et al., Science, 293(5529):498-506 (2001)
[oct01] | Predicted Genes [confirmed] | [NC_003028] | web |
| 2001 | - | R6 | 2Mb [2,038,615] |
Hosklins et al., J Bacteriol, 183(19):5709-5717 (2001)
[oct01] | Predicted Genes [confirmed] | [NC_003098] | web |
| 2001 | Streptococcus pyogenes | SF370 (M1) | 1.85 Mb [1,852,441] |
Ferretti et al., PNAS, 98(8):4658-4663 (2001).
[sep01] | Predicted Genes [confirmed] | [NC_002737] | web |
| 2002 | - | MGAS8232 | 1.9Mb [1,895,017] |
Smoot et al., PNAS, 99(7):4668-4673 (2002)
[Feb02] | Predicted Genes [confirmed] | [NC_003485] | web |
| 2002 | - | MGAS315 | 1.9 Mb [1,900,521] |
Beres et al. (2002), PNAS, 99(15):10078-10083.
[date] | Predicted Genes [confirmed] | [NC_004070] | web |
| 2002 | Streptomyces coelicolor | . | 8.67 Mb [8,667,507] |
Bentley et al., Nature, 417(6885):141-147 (2002) [may02] | ? [?] | [NC_003888] | Sanger [uk] |
| 1996 |
Synechocystis | PCC6803 | 3.57 Mb [3,573,470] |
Kaneko, et al, DNA Research, 3:109-136 (1996);
3:185-209 (1996). [March99] | 3168? [?] |
Kazuka [japan] [NC_000911] |
Kazusa [japan], TIGR [usa] |
| 2002 | Thermoanaerobacter tengcongenis | MB4 | 2.69 Mb [2,689,445] | Bao et al., Genome Res, 12(5):689-700 (2002) [may02] | 2588? [?] |
.
[NC_003869] | BGI [china] |
| 2002 | Thermosynechococcus elongatus | BP-1 | 2.6 Mb [2,593,857] |
Nakamura et al.
DNA Research, 9(4):123-130 (2002).
[date] | Predicted Genes [confirmed] | [NC_004113] | Kazusa [japan] |
| 1999 | Thermotoga maritima | MSB8 | 1.86 Mb [1,860,725] | Nelson, et al. Nature,299:323-329 (1999) [June99] | 1846?1877?1879? [1424] | TIGR
[NC_000853] | TIGR |
| 1998 | Treponema pallidum | . | 1.14 Mb [1,138,011] | Fraser, et al. Science, 281:375-388 (1998) | 1031?1040?1041? [720?] |
UTexas
[NC_000919] |
TIGR UTexas |
| 2000 | Ureaplasma urealyticum | serovar 3 | 0.8 Mb | ? [Feb00] | ? [?] | ? [NC_002162] | ? |
| 2000 | Vibrio cholerae | serotype O1, N16961 | 4.03 Mb [4,033,460] |
Heidelberg, et al, Nature, 406:477-483(2000) [Aug00] | 3885? [?] |
TIGR [NC_002505, NC_002506] | TIGR |
| 2002 | Wigglesworthia brevipalpi | strain | 0.7 Mb [697,721] | Akman et al. (2002)
Nature Genetics,
[date] | Predicted Genes [confirmed] | [NC_004344] | web |
| 2002 | Xanthomonas axonopodis | pv. citri str. 306 | 5.2 b [5,175,554] |
da Silva et al., Nature, 417(6887):459-463 (2002). [nov01] | [?] | [NC_003919] | web |
| 2002 | Xanthomonas campestris | pv. campestris str. ATCC 33913 | 5.1 b [5,076,188] |
da Silva et al., Nature, 417(6887):459-463 (2002). [may02] | [?] | [NC_003902] | web |
| 2000 | Xylella fastidiosa | CVC 8.1.b clone 9.a.5.c | 2.68 Mb [2,679,305] | Simpson, et al, Nature, 406:151-157 (2000)
[Jul00] | 2904? [?] | ? [NC_002488] | O.N.S.A. [brazil] |
| 2001 | Yersinia pestis | CO-92 Biovar Orientalis | 4.65Mb [4,653,728] | Parkhill et al., Nature, 413(6855):523-527 (2001).
[oct01] | ? [?] | [NC_003143] | Sanger [uk] |
| 2002 | - | KIM | 4.6 Mb [4,600,755] |
Deng et al., (2002), J. Bacteriol, 184(16):4601-4611.
[date] | Predicted Genes [confirmed] | [NC_004088] | web |