genehunter man page (version 1.1, dec 1996)


PERM2

Summary: permutation test for determining TDT significance
Argument: < number of simulations >

This test performs the same permutation test as in 'perm1' but instead examines all permutations of all two locus haplotypes formed by adjacent markers and markers separated by 1 in the current map order. The results can be interpreted as in the 'perm1' command. This command is only available after the 'tdt' analysis of a pedigree file.