LINKAGE User's Guide

(version 5.2, May 31, 1993)

1. Introduction
1.0. Overview / 1.1. General Features / 1.2. How to Proceed

2. Structure of Input Data
2.0. Overview / 2.1. Phenotypes and Genotypes / 2.2. Numbered Alleles / 2.3. Binary Factors / 2.4. Affection Status / 2.5. Quantitative Variables / 2.6. Descriptions of Loci (DATAFILE) / 2.7. Pedigree Information (PEDFILE) / 2.8. Consanguinity and Marriage Loops

3. Analysis Programs
3.0. Overview / 3.1. Constants / 3.2. ILINK / 3.3. MLINK / 3.4. LINKMAP / 3.5. CILINK / 3.6. CMAP / 3.7. LODSCORE / 3.8. CLODSCORE

4. Data Preprocessing Programs
4.0. Overview / 4.1. UNKNOWN / 4.2. CFACTOR

This documentation was authored by Mark Lathrop,
with modifications by Jurg Ott and others.
It is converted to html by Wentian Li (frame version: 02/08/97)
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