Constructing Genetic Linkage Maps with

MAPMAKER/EXP

Version 3.0

A Tutorial and Reference Manual

Stephen E. Lincoln, Mark J. Daly, and Eric S. Lander

A Whitehead Institute for Biomedical Research Technical Report
Third Edition, January, 1993

(Beta Distribution 3B)

All MAPMAKER Software and Documentation is (c) Copyright 1987-1993
Whitehead Institute for Biomedical Research. All Rights Reserved.
All software and documentation is provided without warranty of any kind.
See the included license agreement for details.

Please address all correspondence to: 

MAPMAKER			Internet:mapmaker@genome.wi.mit.edu
c/o Dr. Eric Lander		Bitnet:	mapm@mitwibr
Whitehead Institute		FAX:	617-258-6505
9 Cambridge Center	
Cambridge, MA  02142  USA

Table of Contents:

Tutorial for MAPMAKER/EXP Version 3.0

Starting MAPMAKER
Finding Linkage Groups by Two-Point Linkage
Exploring Map Orders by Hand
Displaying a Genetic Map
Mapping a Slightly Larger Group
Dealing with Larger Data Sets
Finding Chromosome Assignments
Automatically Finding Map Orders
Verifying a Map Order
Analyzing Another Chromosome
Automatic Error Detection
Saving and Drawing Information about a Mapped Chromosome

MAPMAKER/EXP Version 3.0 Reference Manual

General Information
Basic MAPMAKER/EXP Commands
Sequence Command and Related Features
Two-Point Analysis Commands
Multipoint Analysis Commands
Genome Analysis Features
Systematic Error Detection Mechanism
Three-Point Analysis Mechanism
Joining Haplotypes in Large Data Sets
Parameters and Options
Miscellaneous Commands

back to linkage software list