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WHAT'S NEW in
linkage analysis software list
(2006)

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• 12/20/06
  GENERECON : coalescent based tool for association mapping
  MLR-TAGGING : multivariate linear regression tagging SNP selection
  OSIRIS : searching tool for sequence variants, including SNPs

• 12/19/06
  EQTL EXPLORER:
  SNAP : suite of nucleotide analysis programs
  SNPSTATS : web-based, easy-to-use software for genetic association analysis using SNPs
  BMAPBUILDER : build chromosome-wide LD map

• 12/15/06
  POPGEN : R package focusing on population genetics methods
  HAPGEN : simulation of case control SNP haplotypes
  SELSIM : simulation of population genetics data in which a single site has experienced natural selection

• 12/06/06
  EIGENSOFT/EIGENSTART

• 12/04/06
  HAPLOTTER : scan for positive selection in the human genome

• 11/30/06
  PYPOP: Python for population genetics

• 11/29/06
  2SNP : a scalable haplotype inference program
  ALTREE : using phylogenetic trees to group haplotypes in order to detect and localize disease susceptibility sites
  BEAGLE : single marker and haplotypic association analysis
  CHROMOSCAN : scan statistic that detects genomic regions
  CHROMSCAN : association mapping of disease genes using Malecot model and LD map
  FINESSE : adding regression models to the VITESSE program
  GENETSIM : simulation of familial data
  PEDPHASE : haplotype inference with pedigree data
  PROFILER : generating probability distribution of joint multilocus genotypes
  ZAPLO : zero-recombinant haplotyping

• 11/10/06
  VG : visual genotype
  VH : visual haplotype
  LDSELECT :
  MULTIPOPTAGSELECT:
  TAGSNP :
  TAGGER :
  FESTA : frgmented exhaustive search for tagSNP
  REAPER :
  BOOSTRAPPER : haploblock border detection

• 09/01/06
  CFC : Contribution, Inbreeding (F) and Coancestry

• 08/24/06
  POWQ : power analysis (via simulation) of variance component multipoint linkage analysis of QTL

• 08/23/06
  GAIA : genetic association interaction analysis

• 08/21/06
  PSEUDO : fast evaluation of empirical p-values for linkage scans

• 08/11/06
  BIOLAD-DB : system/database for handling clinical and genetic data for addictive diseases

• 07/18/06
  RTDT : robust TDT

• 07/17/06
  HAPLOCLUSTERS :
  LAMP : Linkage and Association Modeling in Pedigrees
  SUP : SLINK utility program

• 06/12/06
  SCOUT : association analysis of triads and unrelated subjects

• 06/05/06
  MIDAS : multiallelic interallelic disequilibrium analysis software

• 04/13/06
  PEDGENIE : association and TDT for pedigrees of any sizes

• 03/31/06
  CCREL : case-control analysis that takes relatedness between individuals into account
  GENOPROOF : with the scope of paternity testing and descent investigations
  SPLAT : sib pair linkage analysis testing
  RISCALW : risk calculation

• 02/28/06
  CATS : power calculator for two-stage association analysis
  a new version (3.01) of ARLEQUIN

• 02/21/06
  SDMINP : a program to control the family-wise error rate using step-down minP adjusted p-values
  TOMCAT : Haplotype sharing analysis using mantel statistics
  TASSEL : association and diversity analyses in plants and animals

• 02/16/06
  FLOSS : Flexible Ordered Subset Analysis

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