Title: UNDERSTANDING LONG-RANGE CORRELATIONS IN DNA-SEQUENCES
Author(s): LI WT, MARR TG, KANEKO K
Source: PHYSICA D 75 (1-3): 392-416 AUG 1 1994

citation information (jul 2006, from ISI web of knowledge)


65
       Vaillant C, Audit B, Thermes C, et al.
       Formation and positioning of nucleosomes: Effect of sequence-dependent
       long-range correlated structural disorder 
       EUROPEAN PHYSICAL JOURNAL E 19 (3): 263-277 MAR 2006 
64
       Cancho RFI, Lusseau D
       Long-term correlations in the surface behavior of dolphins 
       EUROPHYSICS LETTERS 74 (6): 1095-1101 JUN 2006 
63
       Hwang CH, Chiu D, Sohn I
       Exon structure analysis via PCA and ICA of short-time Fourier transform 
       LECTURE NOTES IN COMPUTER SCIENCE 3611: 306-315 2005 
62
      Tian YX, Chen C, Zou XY, et al.
      Fourier power spectrum analysis of exons for the period-3 behavior 
      CHINESE CHEMICAL LETTERS 16 (7): 939-942 JUL 2005 

61
       Tian YX, Chen C, Zou XY, et al.
       Study on period-3 behavior of exons 
       ACTA CHIMICA SINICA 63 (13): 1215-1219 JUL 14 2005 
60
       Oiwa NN, Goldman C
       On the analysis of large-scale genomic structures 
       CELL BIOCHEMISTRY AND BIOPHYSICS 42 (2): 145-165 2005 
59 
       Isohata Y, Hayashi M
       Analyses of DNA base sequences for eukaryotes in terms of power spectrum method 
       JAPANESE JOURNAL OF APPLIED PHYSICS PART 1-REGULAR PAPERS
       SHORT NOTES & REVIEW PAPERS 44 (2): 1143-1146 FEB 2005 
58  
       Zhou LQ, Yu ZG, Deng JQ, et al.
       A fractal method to distinguish coding and non-coding sequences in a complete genome
       based on a number sequence representation 
       JOURNAL OF THEORETICAL BIOLOGY 232 (4): 559-567 FEB 21 2005 
57 
       Krishnamachari K, Krishnamachari A
       Sequence variability and long-range dependence in DNA: An information theoretic
       perspective 
       LECTURE NOTES IN COMPUTER SCIENCE 3316: 1354-1361 2004 

1. 
       Arneodo A, Audit B, Vaillant C, et al.
       Extracting structural and dynamical informations from wavelet-based analysis of
       DNA sequences 
       INSTITUTE OF PHYSICS CONFERENCE SERIES 173: 905-913 2003 
    2. 
       Ouyang ZQ, Wang C, She ZS
       Scaling and hierarchical structures in DNA sequences 
       PHYSICAL REVIEW LETTERS 93 (7): Art. No. 078103 AUG 13 2004 
    3. 
       Zhang LX, Jiang ZT
       Long-range correlations in DNA sequences using 2D DNA walk based on pairs of
       sequential nucleotides 
       CHAOS SOLITONS & FRACTALS 22 (4): 947-955 NOV 2004 
    4. 
       Sharma D, Issac B, Raghava GPS, et al.
       Spectral Repeat Finder (SRF): identification of repetitive sequences using Fourier
       transformation 
       BIOINFORMATICS 20 (9): 1405-1412 JUN 12 2004 
    5. 
       Carels N, Vidal R, Mansilla R, et al.
       The mutual information theory for the certification of rice coding sequences 
       FEBS LETTERS 568 (1-3): 155-158 JUN 18 2004 
    6. 
       Chakravarthy N, Spanias A, Iasemidis LD, et al.
       Autoregressive modeling and feature analysis of DNA sequences 
       EURASIP JOURNAL ON APPLIED SIGNAL PROCESSING 2004 (1): 13-28 JAN 1
       2004 
    7. 
       Audit B, Vaillant C, Arneodo A, et al.
       Wavelet analysis of DNA bending profiles reveals structural constraints on the
       evolution of genomic sequences 
       JOURNAL OF BIOLOGICAL PHYSICS 30 (1): 33-81 2004 
    8. 
       Yu ZG, Anh V, Lau KS
       Iterated function system and multifractal analysis of biological sequences 
       INTERNATIONAL JOURNAL OF MODERN PHYSICS B 17 (22-24): 4367-4375
       Part 2 SEP 30 2003 
    9. 
       Zhang CT, Zhang R
       An isochore map of the human genome based on the Z curve method 
       GENE 317 (1-2): 127-135 Sp. Iss. SI OCT 23 2003 
    10. 
       Gusev LV, Vasilevskaya VV, Makeev VJ, et al.
       Segmentation of heteropolymer sequences specifying subsequences with different
       composition and statistical properties 
       MACROMOLECULAR THEORY AND SIMULATIONS 12 (8): 604-613 SEP 26
       2003 

11. 
       Yu ZG, Anh V, Lau KS
       Multifractal and correlation analyses of protein sequences from complete
       genomes 
       PHYSICAL REVIEW E 68 (2): Art. No. 021913 Part 1 AUG 2003 
    12. 
       Holste D, Grosse I, Beirer S, et al.
       Repeats and correlations in human DNA sequences 
       PHYSICAL REVIEW E 67 (6): Art. No. 061913 Part 1 JUN 2003 
    13. 
       Li W, Bernaola-Galvan P, Carpena P, et al.
       Isochores merit the prefix 'iso' 
       COMPUTATIONAL BIOLOGY AND CHEMISTRY 27 (1): 5-10 FEB 2003 
    14. 
       Szczepanski J, Michalek T
       Random fields approach to the study of DNA chains 
       JOURNAL OF BIOLOGICAL PHYSICS 29 (1): 39-54 2003 
    15. 
       Bernaola-Galvan P, Carpena P, Roman-Roldan R, et al.
       Study of statistical correlations in DNA sequences 
       GENE 300 (1-2): 105-115 OCT 30 2002 
    16. 
       Li WT
       Are isochore sequences homogeneous? 
       GENE 300 (1-2): 129-139 OCT 30 2002 
    17. 
       Scafetta N, Latora V, Grigolini P
       Levy scaling: The diffusion entropy analysis applied to DNA sequences 
       PHYSICAL REVIEW E 66 (3): Art. No. 031906 Part 1 SEP 2002 
    18. 
       Anh VV, Lau KS, Yu ZG
       Recognition of an organism from fragments of its complete genome 
       PHYSICAL REVIEW E 66 (3): Art. No. 031910 Part 1 SEP 2002 
    19. 
       Azad RK, Rao JS, Li WT, et al.
       Simplifying the mosaic description of DNA sequences 
       PHYSICAL REVIEW E 66 (3): Art. No. 031913 Part 1 SEP 2002 
    20. 
       Scafetta N, Latora V, Grigolini P
       Levy statistics in coding and non-coding nucleotide sequences 
       PHYSICS LETTERS A 299 (5-6): 565-570 JUL 15 2002 

21. 
       Li WT, Bernaola-Galvan P, Haghighi F, et al.
       Applications of recursive segmentation to the analysis of DNA sequences 
       COMPUTERS & CHEMISTRY 26 (5): 491-510 Sp. Iss. SI JUL 2002 
    22. 
       Azad RK, Bernaola-Galvan P, Ramaswamy R, et al.
       Segmentation of genomic DNA through entropic divergence: Power laws and scaling 
       PHYSICAL REVIEW E 65 (5): Art. No. 051909 Part 1 MAY 2002 
    23. 
       Zhang J, Shi XF
       Tentative study of the coding sequences without 3-base periodicity 
       PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS 29 (2): 267-272 APR 2002 
    24. 
       Wang J, Zhang QD, Ren K, et al.
       Multi-scaling hierarchical structure analysis on the sequence of E-coli complete
       genome 
       CHINESE SCIENCE BULLETIN 46 (23): 1988-1992 DEC 2001 
    25. 
       Bhattacharya J, Petsche H
       Universality in the brain while listening to music 
       PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES
       B-BIOLOGICAL SCIENCES 268 (1484): 2423-2433 DEC 7 2001 
    26. 
       Yu ZG, Anh V, Lau KS
       Multifractal characterisation of length sequences of coding and noncoding segments in
       a complete genome 
       PHYSICA A 301 (1-4): 351-361 DEC 1 2001 
    27. 
       Gutierrez JM, Rodriguez MA, Abramson G
       Multifractal analysis of DNA sequences using a novel chaos-game representation 
       PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 300 (1-2):
       271-284 NOV 1 2001 
    28. 
       Li WT
       Delineating relative homogeneous G+C domains in DNA sequences 
       GENE 276 (1-2): 57-72 Sp. Iss. SI OCT 3 2001 
    29. 
       Yu ZG, Anh V, Lau KS
       Measure representation and multifractal analysis of complete genomes 
       PHYSICAL REVIEW E 64 (3): Art. No. 031903 Part 1 SEP 2001 
    30. 
       Anastassiou D
       Genomic signal processing 
       IEEE SIGNAL PROCESSING MAGAZINE 18 (4): 8-20 JUL 2001 

31. 
       Yu ZG, Jiang P
       Distance, correlation and mutual information among portraits of organisms based on
       complete genomes 
       PHYSICS LETTERS A 286 (1): 34-46 JUL 16 2001 
    32. 
       Li WT
       New stopping criteria for segmenting DNA sequences 
       PHYSICAL REVIEW LETTERS 86 (25): 5815-5818 JUN 18 2001 
    33. 
       Audit B, Thermes C, Vaillant C, et al.
       Long-range correlations in genomic DNA: A signature of the nucleosomal structure 
       PHYSICAL REVIEW LETTERS 86 (11): 2471-2474 MAR 12 2001 
    34. 
       Kirillova OV
       Comparative statistical analysis of bacteria genomes in "word" context 
       PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS 290
       (3-4): 453-463 FEB 15 2001 
    35. 
       Yu ZG, Anh VV, Wang B
       Correlation property of length sequences based on global structure of the complete
       genome 
       PHYSICAL REVIEW E 63 (1): Art. No. 011903 Part 1 JAN 2001 
    36. 
       Anastassiou D
       Frequency-domain analysis of biomolecular sequences 
       BIOINFORMATICS 16 (12): 1073-1081 DEC 2000 
    37. 
       Ramensky VE, Makeev VJU, Roytberg MA, et al.
       DNA segmentation through the Bayesian approach 
       JOURNAL OF COMPUTATIONAL BIOLOGY 7 (1-2): 215-231 FEB-APR 2000 
    38. 
       Oliver JL, Roman-Raldan R, Perez J, et al.
       SEGMENT: identifying compositional domains in DNA sequences 
       BIOINFORMATICS 15 (12): 974-979 DEC 1999 
    39. 
       Mohanty AK, Rao AVSSN
       Factorial moments analyses show a characteristic length scale in DNA sequences 
       PHYSICAL REVIEW LETTERS 84 (8): 1832-1835 FEB 21 2000 
    40. 
       Frontali C, Pizzi E
       Similarity in oligonucleotide usage in introns and intergenic regions contributes to
       long-range correlation in the Caenorhabditis elegans genome 
       GENE 232 (1): 87-95 MAY 17 1999 

41. 
       Atchley WR, Terhalle W, Dress A
       Positional dependence, cliques, and predictive motifs in the bHLH protein domain 
       JOURNAL OF MOLECULAR EVOLUTION 48 (5): 501-516 MAY 1999 
    42. 
       Abramson G, Cerdeira HA, Bruschi C
       Fractal properties of DNA walks 
       BIOSYSTEMS 49 (1): 63-70 JAN 1999 
    43. 
       Osaka M, Gohara K, Ishii S, et al.
       Symbolic strings and spatial 1/f spectra 
       PHYSICA D 125 (1-2): 142-154 JAN 1 1999 
    44. 
       Li WT, Stolovitzky G, Bernaola-Galvan P, et al.
       Compositional heterogeneity within, and uniformity between, DNA sequences of
       yeast chromosomes 
       GENOME RESEARCH 8 (9): 916-928 SEP 1998 
    45. 
       Buldyrev SV, Dokholyan NV, Goldberger AL, et al.
       Analysis of DNA sequences using methods of statistical physics 
       PHYSICA A 249 (1-4): 430-438 FEB 1 1998 
    46. 
       Li WT
       The study of correlation structures of DNA sequences: a critical review 
       COMPUTERS & CHEMISTRY 21 (4): 257-271 1997 
    47. 
       Tiwari S, Ramachandran S, Bhattacharya A, et al.
       Prediction of probable genes by Fourier analysis of genomic sequences 
       COMPUTER APPLICATIONS IN THE BIOSCIENCES 13 (3): 263-270 JUN
       1997 
    48. 
       Viswanathan GM, Buldyrev SV, Havlin S, et al.
       Quantification of DNA patchiness using long-range correlation measures 
       BIOPHYSICAL JOURNAL 72 (2): 866-875 Part 1 FEB 1997 
    49. 
       Arneodo A, dAubentonCarafa Y, Bacry E, et al.
       Wavelet based fractal analysis of DNA sequences 
       PHYSICA D 96 (1-4): 291-320 SEP 15 1996 
    50. 
       Tiwari S, Bhattacharya A, Bhattacharya S, et al.
       Gene identification in silico 
       CURRENT SCIENCE 71 (1): 12-24 JUL 10 1996 

51. 
       BernaolaGalvan P, RomanRoldan R, Oliver JL
       Compositional segmentation and long-range fractal correlations in DNA sequences 
       PHYSICAL REVIEW E 53 (5): 5181-5189 Part B MAY 1996 
    52. 
       Stanley HE, Afanasyev V, Amaral LAN, et al.
       Anomalous fluctuations in the dynamics of complex systems: From DNA and
       physiology to econophysics 
       PHYSICA A 224 (1-2): 302-321 FEB 1 1996 
    53. 
       DOMINGUEZADAME F, SANCHEZ A, KIVSHAR YS
       SOLITON PINNING BY LONG-RANGE ORDER IN APERIODIC SYSTEMS 
       PHYSICAL REVIEW E 52 (3): R2183-R2186 Part A SEP 1995 
    54. 
       HERZEL H, GROSSE I
       MEASURING CORRELATIONS IN SYMBOL SEQUENCES 
       PHYSICA A 216 (4): 518-542 JUL 1 1995 
    55. 
       AZBEL MY
       UNIVERSALITY IN A DNA STATISTICAL STRUCTURE 
       PHYSICAL REVIEW LETTERS 75 (1): 168-171 JUL 3 1995 
    56. 
       LI WT, MARR TG, KANEKO K
       UNDERSTANDING LONG-RANGE CORRELATIONS IN DNA-SEQUENCES
       (VOL D75, PG 392, 1994) 
       PHYSICA D 82 (1-2): 217-217 APR 1 1995