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gene expression
genetic association
copy number variations
DNA correlation
duplication
gene recognition
1/f noise
Zipf's law
absolute pitch
genetic analysis softwares
bioinformatics courses and degrees
statistical genetics courses
microarray courses
complete genomes
CV
publications
presentations
meetings/trips
contact
links to past
100 human genes
2005 Mexico course
on genetic association analysis
Perl code for recursive
segmentation of DNA sequences
list of journals
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bookmarks
google scholar
pubmed
genome browser
ensembl
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On acceleration of major transitions in evolution
(talk, Shanghai Jiao Tong University,
Center for Systems Biomedicine, Shanghai, China, July 2010)
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On acceleration of major transitions in evolution
(talk, Workshop on Evolutionary Theory, Cuernavaca, Mexico, August 2009)
[powerpoint]
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Partial correlation analysis indicates causal relationships between GC-content,
exon density and recombination rate variation in the human genome
(talk, APBC'09, Beijing, China, January 2009)
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Detection of regions with copy-number-variation or copy-number-alteration
by cumulative plots
(talk, APBC'09, Beijing, China, January 2009)
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Genetic diagnosis: are we there yet?
(talk, Feinstein Institute for Medical Research, December 2008)
[powerpoint]
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Copy number variation: a new type of genetic marker in whole-genome
association studies
(talk, Northwestern University, October 2008)
[powerpoint]
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Partial correlation analysis indicates causal relationships between GC-content,
exon density and recombination rate variation in the human
(co-authors: Jan Freudenberg, Mingyi Wang, Yaning Yang)
(poster, Feinstein Institute for Medical Research retreat, September 2008)
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Population genomic analysis of the human extended MHC region
(co-authors: Jan Freudenberg, Peter K Gregersen)
(poster, Feinstein Institute for Medical Research retreat, September 2008)
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Selecting the disease causing polymorphism among several disease-associated SNPs that are in strong linkage disequilibrium
(co-authors: Elaine F Remmers, Peter K Gregersen)
(poster, Feinstein Institute for Medical Research retreat, September 2008)
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Detection of regions with copy-number-variation or copy-number-alteration
by cumulative plots
(co-aothors: Annette Lee, Nicholas Chiorazzi, Peter K gregersen)
(poster, Feinstein Institute for Medical Research retreat, September 2008)
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Selecting the more powerful tests in genetic associatin studies using
phase diagram
(talk, Department of Epidemiology and Population Health, Albert Einstein
College of Medicine, December 2007)
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Possible age-effects on gene expression in normal samples
(poster, Feinstein Institute for Medical Research retreat, September 2007)
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Two new concepts in single-marker case-control genetic association tests:
fractional degrees of freedom and phase diagram
(poster, Feinstein Institute for Medical Research retreat, September 2007)
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Causal Inference in Genetics
(talk, NSF Sponsored International Conference on Bioinformatics, Hangzhou, China, Jun 2007)
[powerpoint]
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Genotype-based case-control analysis, violation of Hardy-Weinberg
equilibrium, and phase diagram
(talk, co-author Young Ju Suh)
(APBC'07, Hong Kong, China, January 2007)
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Using pedigree founders only or using all pedigree members?
-- A comparison of SNP-expression regression results,
(co-authors: YJ Suh, HS Lee, F Batliwalla)
(poster, Genetic Analysis Workshop 15, St. Pete Beach, FL, November 2006)
[PDF]
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Genotype-based case-control analysis, violation of
Hardy-Weinberg equilibrium, and phase diagrams
(poster, North Shore LIJ retreat, October 2006)
[PDF]
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Inferring causal relationships among intermediate
phenotypes and biomarkers: a case study of rheumatoid
arthritis
(poster, North Shore LIJ retreat, October 2006)
[PDF]
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Causal Inference for Genetic and Microarray Data
(talk, International Workshop on Exploring the Mechanisms and Landscapes
of Cellular Networks, Telluride, CO, August 2006)
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Causal Inference of Intermediate Phenotypes and
Biomarkers in Rheumatoid Arthritis: An Application of
Machine Learning Techniques in Genetic Epidemiology
(talk, Fuwai Hospital/Chinese National Human Genome Ceneter, Beijing,
China, May 2006)
[MS PowerPoint]
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A Study of 500kb Oscillation of GC% in Human Chromosome 21
(talk, Center for Theoretical Biology, Beijing University, Beijing, China, May 2006)
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Ohno's Evolution by Duplication and
DNA Correlation
(talk, Institute of Botany, Chinese Academy of Science, Beijing, China,
May 2006)
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A Study of 500kb Oscillation of GC% in Human Chromosome 21
(talk, Institute of Biophysics, Hebei University of Technology, Tianjing, China, May 2006)
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"The less, the better": another trend
in genomic and genetic analysis
(talk, Hersey
Computational Biology and Bioinformatics Seminar,
Cold Spring Harbor Lab, Feb 2006)
[powerpoint]
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Universal 1/f spectra in DNA sequences
(talk, Universaity of Central Florida, December 2005)
[PDF]
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The 500kb Oscillation of GC% and Its Possible
Connection to Down Syndrome
(talk, 6th Anton Dohrn Workshop on Evolutionary Genomics,
Ischia, Naples, November 2005)
[PDF]
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Effective Sample Size of Affected Sib Pairs
in Case-Control Analyses
(poster, North Shore LIJ retreat, September 2005)
[PDF]
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"The More, The Better" or "The Less, The Better"? Conflicting Trends
in Genomic and Genetic Analysis
(talk, Department of Biomathematics, Mt. Sinai School of Medicine,
May 2005)
[power-point]
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Ohno's evolution by duplication and DNA correlations
(talk, Instituto de Investigaciones Biomedicas,
Universidad Nacional Autonoma de Mexico, March 2005)
[MS PowerPoint]
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Association studies to locate human disease genes
(talk, Symposium on pharmacogenomics, Guadalajara, Mexico, March 2005).
[MS PowerPoint]
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Some Recent Progresses in Genome-Wide DNA Sequence Analysis
(talk, Instituto de Fisica,
Universidad Nacional Autonoma de Mexico, November 2004)
[PDF]
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1/f Spectrum is a Universal Feature of Human Genome DNA Sequences
(talk, Texas A&M, April 2004)
[PDF]
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Computer reconstructed haplotypes in pedigrees may not be
trusted
(poster, North Shore LIJ retreat, May 2003)
[PDF]
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Gene Selection Criterion for Discriminant Microarray
Data Analysis Based on Extreme Value Distributions
(talk, International Conference on Research in Computational Molecular
Biology (RECOMB'2003, Berlin, April 2003)
[PDF]
[citation via google]
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Zipf's Law in Importance of Genes for Cancer Classification
Using Microarray Data
(talk, Second Conference of Chinese Bioinformatics Society, Beijing, China,
July 2002)
[PDF] (almost identical with my Barcelona talk)
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Introduction to Microarray Data Analysis
(talk, pre-CCB02 course, Beijing, China, June 2002)
[PDF]
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Statistical Properties of Human Isochore Sequences
(talk, International Workshop on Molecular Evolution, Beijing, June 2002)
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Zipf's Law in Importance of Genes for Cancer Classification
Using Microarray Data
(talk, UPF/IMIM, Barcelona, Spain, April 2002)
[PDF]
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Are Spectral Analyses Useful for DNA Sequence Analysis?
(talk, International Conference on DNA in Chromatin, Arcachon, France, March 2002)
[PDF]
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Low- and High-Level Analysis of Affymetrix Chip Data
(talk, Pharmacia Research Center, Nerviano/Milano, November 2001)
[PDF]
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Five Applications of Recursive Segmentation in DNA Sequence Analysis
(talk, Istituto Superiore di Sanita, Roma, October 2001)
[PDF]
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Are Isochore Sequences Homogeneous?
(talk, 5th Anton Dohrn Workshop on Natural Selection and the Neutral Theory,
Ischia, Naples, October 2001)
[PDF]
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DNA Segmentation as a Model Selection Process
(talk, International Conference on Research in Computational Molecular
Biology'2001, April 2001)
[MS PowerPoint]
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Gene Selection in Discriminant Microarray Data Analysis
(talk, Department of Physiology and Biophysics Seminar, Albert Einstein
College of Medicine, April 2001)
[MS PowerPoint]
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How Many Genes Are Needed for a Discriminant Microarray
Data Analysis?
(talk, Critical Assessment of Techniques for Microarray Data Mining Workshop,
December 2000)
[PDF]
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Applications of Akaike and Bayesian Information Criteria
in Epidemiology, Linkage analysis, Microarray Data Analysis, and
DNA Sequence Analysis
(talk, Genetic Epidemiology Seminar, Columbia University, December 2000)
[PDF]
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Reducing Complexity in Biological and Genetic Data
(talk, Medical Informatics Seminar, Columbia University, November 2000)
[PDF]
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Selecting Mathematical Models of DNA Sequences by Akaike
Information Criterion
(talk, Center for Bioinformatics, Beijing University, July 2000)
[PDF ]
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Applying Artificial Neural Networks in Pedigree Analysis
of Complex Genetic Diseases
(talk, Beijing Bioinformatics Workshop, July 1999)
[PDF]
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Correlations, Domains, and Periodicities in DNA Sequences
(talk, Beijing Bioinformatics Workshop, July 1999)
[PDF]
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A Revised Li-Sacks Formula For Calculating
the Probability of Identity-by-Descent Proportion
(poster, Annual Meeting of American Society of Human Genetics, Denver CO, Oct 1998)
[PDF]
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